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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G65840 | AT | Annotation by Michelle Graham. TAIR10: polyamine oxidase 4 | chr1:24490173-24492728 FORWARD LENGTH=497 | SoyBase | E_val: 0 | ISS |
| GO:0006598 | GO-bp | Annotation by Michelle Graham. GO Biological Process: polyamine catabolic process | SoyBase | N/A | ISS |
| GO:0009611 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to wounding | SoyBase | N/A | ISS |
| GO:0009698 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phenylpropanoid metabolic process | SoyBase | N/A | ISS |
| GO:0009805 | GO-bp | Annotation by Michelle Graham. GO Biological Process: coumarin biosynthetic process | SoyBase | N/A | ISS |
| GO:0042398 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular modified amino acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005777 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: peroxisome | SoyBase | N/A | ISS |
| GO:0008131 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: primary amine oxidase activity | SoyBase | N/A | ISS |
| GO:0046592 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: polyamine oxidase activity | SoyBase | N/A | ISS |
| KOG0029 | KOG | Amine oxidase | JGI | ISS | |
| PTHR10742 | Panther | AMINE OXIDASE | JGI | ISS | |
| PTHR10742:SF30 | Panther | AMINE OXIDASE | JGI | ISS | |
| PF01593 | PFAM | Flavin containing amine oxidoreductase | JGI | ISS | |
| UniRef100_G7J7X8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Polyamine oxidase n=2 Tax=Medicago truncatula RepID=G7J7X8_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LM64 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LM64_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma11g33090 not represented in the dataset |
Glyma11g33090 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma18g05140 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g153100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g33090.3 sequence type=transcript gene model=Glyma11g33090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATATTACATATTTTCGGTTGGACAAAATTTAGATCTGGTTCCAGGGGTGCTTTTGATCTTGTTCTCTGATCAGAATTAGAATTCTAGCCGAGGTGAAACTCCAGTTCTGAGTGGAAAGAACACTTGGCACTTGGAACTGGATATAAGTTTTGTGCTTTTCAATTTTATGAATAGGTACTATTGCCTCATGCATTGAGGGCCAACACAGAGGAGCTATCCCTTCCGTTATTGTGATTGGTGCTGGAATATCTGGACTTGCTGCAGCACGAAGTCTCCACGATGCATCTTTTAAGGTGACTGTACTGGAGTCACGAGATAGGCTTGGTGGTCGCATTCATACTGACTTCTCATTTGGTTGTCCAGTTGACATGGGAGCCTCATGGCTACATGGAGTTTGTAATGAGAATCCATTGGCTCCATTGATTCGTGGCCTGGGGCTTTCATTATATCGTACCAGTGGTGATAACTCTGTCTTATATGACCATGATTTGGAAAGTTATATGCTTTTTAACATTGATGGTAAGCAAGTTCCACAACAGATGGTCATTGAAGTTGGAGACATCTTTAAGAAAATTCTGGAAGAGACAGGGAAAGTGAGGGATGAGCATACCGAGGACATTTCAGTTTCCCAAGCTATTTCAATTGTGCTAGATAGGCACCCAGAACTAAGGCAACAAGGACTTGCCCATGAAGTGCTACAATGGTTTATATGCAGAATGGAAGCTTGGTTTGCTGCTGATGCAGATATGATTTCACTGAAAACCTGGGATCAGGAACATGTCCTGTCTGGTGGTCATGGACTCATGGTGCAAGGATATGATCCAATCATAAAAGTTCTTGCAAAAGATATTGACATATGCTTGAACCAAAGGGTGAAAATGATATCTAGTGGTTACAACAAGGTAATGGTCACGGTCGAGGATGGCAGGAACTTTGTTGCTGATGCTGCTATCATAACTGTTCCTATTGGAATCCTAAAAGCCAATTTAATTCAATTTGAACCAAAACTTCCTGATTGGAAGGTTTCAGCAATTTCAGACCTTGGTGTGGGCAATGAAAATAAGATTGCCCTAAGATTTGACAAAGTATTTTGGCCTAATGTAGAACTCTTGGGCACTGTTGCTCCGACCTCTTATACCTGTGGCTATTTTCTCAATCTTCACAAAGCAACAGGCCATCCTGTTCTTGTCTACATGGTAGCTGGAAGGTTCGCTTATGACATTGAGAAGCTATCTGATGAAGCAGCCGCAAATTTTGTAATGCAACAGCTCAAGAAGATGTTTCCAAATTCTTCTAAGCCAGTTCAGTATCTTGTGTCTCGATGGGGAACGGATCCAAACTCCCTTGGATGTTACTCGTATGATTTAGTTGGAAAACCACTCGATGTGTATGACAAGCTTCGTGCACCTTTGGGCAATCTATTCTTTGGGGGAGAAGCTGTAAGCTTGGACAATCAGGGATCTGTGCATGGAGCTTACTCAGCTGGGGTCATGGCTGCAGAAAATTGTGAGAGCTATCTTTTAGAAAAACTAGGCCACGTGGAAAAGCTATCTCTAGCTTCTGTTAGGCATGAAATGCTTGAAACTCTTATACCTCTTCAGATCTCGAGGATGTGATTTGTTGGTTCTCAGTAGTAGCTTTTAGACAATGATTCTGGATAACGCAATGGCAAAATATTTGCCATTCAATATAATAAAGAAATAACTGTTCTTTAAGGATGGTGAATTGGTGATTGGTGACTATCGTCCAAGTAACACCATTTTCACTCATTGGGGTCGAATAGCTTTTTTTATCCTTTTTTCATAAGCTTGGCTTATTAAGGTGTATGTACCTTGGTCCATCTTAGTCACAGTGCATGTAAGACCATATCTATTGTGATCCCCACAATTCTGTAACGTGGGGGTGCCCTACTTGTAGGTAGCTTCTCAACATTTCCTTAATCAGCATCTTGGCATACAACAATGTGCTTTCTTTCCTTAGGCTAGTTTGTTTGTTTGCCCTTTCTATCTCTTGTTCTTTCTTATTAGTGTTTTTGCATTTAGCCGAAAGAGGACCAAAAGGAAACATGATTATCATTTCCCTTCCTTTTAGAATGCACAAAATCAGATTACTTTTGGTAAAGAGGGAGCACTGGAAGGGTGTGGGAACATTTCATAGAAGACAAACAATAAAAAAAAAAACTGATAAAAAAGTAGTCAAAATTAGCCACTTATGTT
>Glyma11g33090.1 sequence type=CDS gene model=Glyma11g33090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAACCTAATCAGCTCTTCTCCACGCATTTCCGCGATGGTACTATTGCCTCATGCATTGAGGGCCAACACAGAGGAGCTATCCCTTCCGTTATTGTGATTGGTGCTGGAATATCTGGACTTGCTGCAGCACGAAGTCTCCACGATGCATCTTTTAAGGTGACTGTACTGGAGTCACGAGATAGGCTTGGTGGTCGCATTCATACTGACTTCTCATTTGGTTGTCCAGTTGACATGGGAGCCTCATGGCTACATGGAGTTTGTAATGAGAATCCATTGGCTCCATTGATTCGTGGCCTGGGGCTTTCATTATATCGTACCAGTGGTGATAACTCTGTCTTATATGACCATGATTTGGAAAGTTATATGCTTTTTAACATTGATGGTAAGCAAGTTCCACAACAGATGGTCATTGAAGTTGGAGACATCTTTAAGAAAATTCTGGAAGAGACAGGGAAAGTGAGGGATGAGCATACCGAGGACATTTCAGTTTCCCAAGCTATTTCAATTGTGCTAGATAGGCACCCAGAACTAAGGCAACAAGGACTTGCCCATGAAGTGCTACAATGGTTTATATGCAGAATGGAAGCTTGGTTTGCTGCTGATGCAGATATGATTTCACTGAAAACCTGGGATCAGGAACATGTCCTGTCTGGTGGTCATGGACTCATGGTGCAAGGATATGATCCAATCATAAAAGTTCTTGCAAAAGATATTGACATATGCTTGAACCAAAGGGTGAAAATGATATCTAGTGGTTACAACAAGGTAATGGTCACGGTCGAGGATGGCAGGAACTTTGTTGCTGATGCTGCTATCATAACTGTTCCTATTGGAATCCTAAAAGCCAATTTAATTCAATTTGAACCAAAACTTCCTGATTGGAAGGTTTCAGCAATTTCAGACCTTGGTGTGGGCAATGAAAATAAGATTGCCCTAAGATTTGACAAAGTATTTTGGCCTAATGTAGAACTCTTGGGCACTGTTGCTCCGACCTCTTATACCTGTGGCTATTTTCTCAATCTTCACAAAGCAACAGGCCATCCTGTTCTTGTCTACATGGTAGCTGGAAGGTTCGCTTATGACATTGAGAAGCTATCTGATGAAGCAGCCGCAAATTTTGTAATGCAACAGCTCAAGAAGATGTTTCCAAATTCTTCTAAGCCAGTTCAGTATCTTGTGTCTCGATGGGGAACGGATCCAAACTCCCTTGGATGTTACTCGTATGATTTAGTTGGAAAACCACTCGATGTGTATGACAAGCTTCGTGCACCTTTGGGCAATCTATTCTTTGGGGGAGAAGCTGTAAGCTTGGACAATCAGGGATCTGTGCATGGAGCTTACTCAGCTGGGGTCATGGCTGCAGAAAATTGTGAGAGCTATCTTTTAGAAAAACTAGGCCACGTGGAAAAGCTATCTCTAGCTTCTGTTAGGCATGAAATGCTTGAAACTCTTATACCTCTTCAGATCTCGAGGATGTGA >Glyma11g33090.3 sequence type=CDS gene model=Glyma11g33090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGAGCCTCATGGCTACATGGAGTTTGTAATGAGAATCCATTGGCTCCATTGATTCGTGGCCTGGGGCTTTCATTATATCGTACCAGTGGTGATAACTCTGTCTTATATGACCATGATTTGGAAAGTTATATGCTTTTTAACATTGATGGTAAGCAAGTTCCACAACAGATGGTCATTGAAGTTGGAGACATCTTTAAGAAAATTCTGGAAGAGACAGGGAAAGTGAGGGATGAGCATACCGAGGACATTTCAGTTTCCCAAGCTATTTCAATTGTGCTAGATAGGCACCCAGAACTAAGGCAACAAGGACTTGCCCATGAAGTGCTACAATGGTTTATATGCAGAATGGAAGCTTGGTTTGCTGCTGATGCAGATATGATTTCACTGAAAACCTGGGATCAGGAACATGTCCTGTCTGGTGGTCATGGACTCATGGTGCAAGGATATGATCCAATCATAAAAGTTCTTGCAAAAGATATTGACATATGCTTGAACCAAAGGGTGAAAATGATATCTAGTGGTTACAACAAGGTAATGGTCACGGTCGAGGATGGCAGGAACTTTGTTGCTGATGCTGCTATCATAACTGTTCCTATTGGAATCCTAAAAGCCAATTTAATTCAATTTGAACCAAAACTTCCTGATTGGAAGGTTTCAGCAATTTCAGACCTTGGTGTGGGCAATGAAAATAAGATTGCCCTAAGATTTGACAAAGTATTTTGGCCTAATGTAGAACTCTTGGGCACTGTTGCTCCGACCTCTTATACCTGTGGCTATTTTCTCAATCTTCACAAAGCAACAGGCCATCCTGTTCTTGTCTACATGGTAGCTGGAAGGTTCGCTTATGACATTGAGAAGCTATCTGATGAAGCAGCCGCAAATTTTGTAATGCAACAGCTCAAGAAGATGTTTCCAAATTCTTCTAAGCCAGTTCAGTATCTTGTGTCTCGATGGGGAACGGATCCAAACTCCCTTGGATGTTACTCGTATGATTTAGTTGGAAAACCACTCGATGTGTATGACAAGCTTCGTGCACCTTTGGGCAATCTATTCTTTGGGGGAGAAGCTGTAAGCTTGGACAATCAGGGATCTGTGCATGGAGCTTACTCAGCTGGGGTCATGGCTGCAGAAAATTGTGAGAGCTATCTTTTAGAAAAACTAGGCCACGTGGAAAAGCTATCTCTAGCTTCTGTTAGGCATGAAATGCTTGAAACTCTTATACCTCTTCAGATCTCGAGGATGTGA
>Glyma11g33090.1 sequence type=predicted peptide gene model=Glyma11g33090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEPNQLFSTHFRDGTIASCIEGQHRGAIPSVIVIGAGISGLAAARSLHDASFKVTVLESRDRLGGRIHTDFSFGCPVDMGASWLHGVCNENPLAPLIRGLGLSLYRTSGDNSVLYDHDLESYMLFNIDGKQVPQQMVIEVGDIFKKILEETGKVRDEHTEDISVSQAISIVLDRHPELRQQGLAHEVLQWFICRMEAWFAADADMISLKTWDQEHVLSGGHGLMVQGYDPIIKVLAKDIDICLNQRVKMISSGYNKVMVTVEDGRNFVADAAIITVPIGILKANLIQFEPKLPDWKVSAISDLGVGNENKIALRFDKVFWPNVELLGTVAPTSYTCGYFLNLHKATGHPVLVYMVAGRFAYDIEKLSDEAAANFVMQQLKKMFPNSSKPVQYLVSRWGTDPNSLGCYSYDLVGKPLDVYDKLRAPLGNLFFGGEAVSLDNQGSVHGAYSAGVMAAENCESYLLEKLGHVEKLSLASVRHEMLETLIPLQISRM* >Glyma11g33090.3 sequence type=predicted peptide gene model=Glyma11g33090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGASWLHGVCNENPLAPLIRGLGLSLYRTSGDNSVLYDHDLESYMLFNIDGKQVPQQMVIEVGDIFKKILEETGKVRDEHTEDISVSQAISIVLDRHPELRQQGLAHEVLQWFICRMEAWFAADADMISLKTWDQEHVLSGGHGLMVQGYDPIIKVLAKDIDICLNQRVKMISSGYNKVMVTVEDGRNFVADAAIITVPIGILKANLIQFEPKLPDWKVSAISDLGVGNENKIALRFDKVFWPNVELLGTVAPTSYTCGYFLNLHKATGHPVLVYMVAGRFAYDIEKLSDEAAANFVMQQLKKMFPNSSKPVQYLVSRWGTDPNSLGCYSYDLVGKPLDVYDKLRAPLGNLFFGGEAVSLDNQGSVHGAYSAGVMAAENCESYLLEKLGHVEKLSLASVRHEMLETLIPLQISRM*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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