SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G65810 | AT | Annotation by Michelle Graham. TAIR10: P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:24477043-24480728 REVERSE LENGTH=1050 | SoyBase | E_val: 5.00E-58 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0048451 | GO-bp | Annotation by Michelle Graham. GO Biological Process: petal formation | SoyBase | N/A | ISS |
| GO:0048453 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sepal formation | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| PTHR10887 | Panther | DNA2/NAM7 HELICASE FAMILY | JGI | ISS | |
| PTHR10887:SF27 | Panther | SPLICING ENDONUCLEASE POSITIVE EFFECTOR SEN1 | JGI | ISS | |
| UniRef100_B9SJM1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9SJM1_RICCO | SoyBase | E_val: 2.00E-80 | ISS |
| UniRef100_I1MZJ6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1MZJ6_SOYBN | SoyBase | E_val: 8.00E-131 | ISS |
|
Glyma11g32940 not represented in the dataset |
Glyma11g32940 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g32940.1 sequence type=CDS gene model=Glyma11g32940 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTTTGGAAGGTTGGGTGTGGGGATAAAATTAATTTCTGGAAAGATAAATGGTTGGGGGAGGAGTGTAACCTTGAGCTGAAGTATAATCAGCTGTTTATGATTAGTAGACAGCAGACTAATACCATCTCTATGATGGGAAATTTTTCTCAGGGTAATTGGAGTTGGGACTTGAAGTGGAGGAGGAACTTATTTGACCATGAGGATGATATTGCAGTGGCTTTTATGGAAGAAATCAATGCTATTCCTATTCAGTGTCATCTGCAGGGTACCATGTTGTGGAAAGCTGATCCTAGCGGTGTGTATTCCCCTAAGTTAGCTTACAGGTTATTGATGACTTGTAATAGACAGGTTTCAGAGGTAAACATTTTCCAGACAATTTGGAAGTTGAAAATCCCCCCAAGGGCTGCGGTTTTCTCTTGGAGACTTATTAAAGATAGGCTCCCCACTAGACATAACCTTCTTAGAAGAAACGTACCCATTCAGGAAACTGAATGTCCTCTCTGTGGGAATGAACAAGAGGATGCTGGTCACTTGTTTTTCAATTGCAAAATGACTAGAGGCTTATGGTGGGAATCCATGAGGTGGAAGCAGGTTGTAGGAGCACTTTCAGTTTCCCCAGCATCTCACTTTGTCCAATTCTGTGATGGTTTTGGGACTCATGAGATTGAGTTGCCACCCATAGGTCCTCCTACAGCTGTTTGCGTGCCATTAACTCCTGAACTTGGAAGGGTCTCGGGCCCTAGTCAACCATTGCAGATTTCTGTCGAGGCAGGGTTTAGGAGAAGTTTGTTTGAAAGGCTGGTTCTTTTGGGTCATGAAAAACACCTTCTCAATGTTCAATATAGAGTGCATCCATCCATAAGCCGGTTTCCAAATATGGAATTCTATGACAAACAGATTTTGGATTCTCCAAATGTCGAAGAAAGAAGCCATGAGAAACATTTTCTACATGGAGATATGTTTAAGTTCTACTCTTTCATAAATGTTGCTTATGGACAAGATGAATTTGATGAAGGGAATAGCCGAAAAAATATGGTGGAAGTAGCTGTGGTATCTGAGATTGTTCTCAACCTCTATAAAGAATCAGCTTCTAGCAAACAGACTGTTAGTGTTGGTGTTATATCTCCATATAAAGCTCAAGTTTCCACTGTTGATGGTTTCCAAGGTGGCAAAGAGGATGTGAGATGTAATAACATGGGATGGCATAATGCTGACAAGGATGAGAGGTTATCTGATGCTACTGCAACTTCTGTGATTGAGCTTGGTCAAGTTAATGATCTATTGAATTTGAATTCTCTGCTCTTTAAGAAAGCAAAGTGGAAGATTTGCTTCAATCAAGGTTTTCTGATCTCTATGGCAAGAATTAAGAGCACTGAGATTTGCAAGAAAATATGTTTCCTGCTGATGCAACTTTCTAGTGGTTGGCATCAGCCTCACCAGGAGATAAATACTAGAGCTGTGGATGGTACTTCCCAACAGTTGGAACTGTATAAAGTCAATGAGTCACTTTATCTTGCGTGGACCATAGATGTTCTTGAGGAGAACTCAAATAATGTTTAA
>Glyma11g32940.1 sequence type=predicted peptide gene model=Glyma11g32940 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVWKVGCGDKINFWKDKWLGEECNLELKYNQLFMISRQQTNTISMMGNFSQGNWSWDLKWRRNLFDHEDDIAVAFMEEINAIPIQCHLQGTMLWKADPSGVYSPKLAYRLLMTCNRQVSEVNIFQTIWKLKIPPRAAVFSWRLIKDRLPTRHNLLRRNVPIQETECPLCGNEQEDAGHLFFNCKMTRGLWWESMRWKQVVGALSVSPASHFVQFCDGFGTHEIELPPIGPPTAVCVPLTPELGRVSGPSQPLQISVEAGFRRSLFERLVLLGHEKHLLNVQYRVHPSISRFPNMEFYDKQILDSPNVEERSHEKHFLHGDMFKFYSFINVAYGQDEFDEGNSRKNMVEVAVVSEIVLNLYKESASSKQTVSVGVISPYKAQVSTVDGFQGGKEDVRCNNMGWHNADKDERLSDATATSVIELGQVNDLLNLNSLLFKKAKWKICFNQGFLISMARIKSTEICKKICFLLMQLSSGWHQPHQEINTRAVDGTSQQLELYKVNESLYLAWTIDVLEENSNNV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
