SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G35360 | AT | Annotation by Michelle Graham. TAIR10: Uncharacterised conserved protein (UCP030210) | chr4:16812303-16814656 REVERSE LENGTH=367 | SoyBase | E_val: 2.00E-54 | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0004594 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: pantothenate kinase activity | SoyBase | N/A | ISS |
| KOG4584 | KOG | Uncharacterized conserved protein | JGI | ISS | |
| PTHR12280 | Panther | PANTOTHENATE KINASE | JGI | ISS | |
| PTHR12280:SF11 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF01937 | PFAM | Protein of unknown function DUF89 | JGI | ISS | |
| UniRef100_B9RKZ3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Pantothenate kinase, putative n=1 Tax=Ricinus communis RepID=B9RKZ3_RICCO | SoyBase | E_val: 9.00E-55 | ISS |
| UniRef100_UPI000233DCD9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233DCD9 related cluster n=1 Tax=unknown RepID=UPI000233DCD9 | SoyBase | E_val: 6.00E-86 | ISS |
|
Glyma11g32682 not represented in the dataset |
Glyma11g32682 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g32682.1 sequence type=CDS gene model=Glyma11g32682 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTGTTTGACGACAAGAACGTTGCAACCAAGGGAATTGTATGCACCTGCTCTTTCAGCCACCAGATCTACATGATGAGCACTAGATCTAAAGAAGTCGGAGGTGTCGCTTGGCATGTGGAATTAATATCGCATCTTTTGCTGATACATTTCCTGCAAAAAAGGTATGCTAGAATACTTGAAGATTTCAAGAATGATCCTGCAAGTCAAGACATGCCTCTTGATATCCTTATTCTATCCAGACTTCGTGAGCAAGTCCTTAGAGAACAGGGATTCAGAGATATCTTCAAGAAAATAAAGAATGGCATGGAGCAAGAAGTCCTGGAAGAAGGCAAGTGTCATATAGCTATAGAAATGTACAAATTCTATGATACATTTTATGTCTTCTTCCATACTTTGTGTAGGGGTAGTGTCCTAATCAATTCTTTTACATTTGCAATTATATTGGCTGCTAATGACTTACCTTCCATCAATGATGTGACTTACTCTGACCTAATTGAAATTATACCAAAGTTAAAGGATGAAGAAGGACGTCTCACGGGTGTCAGTACTTCAAATCTTCTAATTGCCAACTCCAGAAATGATTTACCTTTGTTGGCCTATGATGCCAGTTCATTGACTTGCTTCTTTCTTGTTTTGTTCAATGGATTCCATGTTATTGATCTTACAAGGGTGTCACAAGAACTTGCATACCTTGCTAATGATGTAGATCTTGTCATGTTAGAAGGGATGGGTCATGGAATAGAAACAAATCTCTATGCTCAATTTAAATGTGATTCCCTTAAGATTGGGAATGTAAAACATCCTGAGGTTGCAGAATTTCTTGGGTCATGTTTGTATGACTGCATAACCAAATACGATGAAGTTTAG
>Glyma11g32682.1 sequence type=predicted peptide gene model=Glyma11g32682 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLFDDKNVATKGIVCTCSFSHQIYMMSTRSKEVGGVAWHVELISHLLLIHFLQKRYARILEDFKNDPASQDMPLDILILSRLREQVLREQGFRDIFKKIKNGMEQEVLEEGKCHIAIEMYKFYDTFYVFFHTLCRGSVLINSFTFAIILAANDLPSINDVTYSDLIEIIPKLKDEEGRLTGVSTSNLLIANSRNDLPLLAYDASSLTCFFLVLFNGFHVIDLTRVSQELAYLANDVDLVMLEGMGHGIETNLYAQFKCDSLKIGNVKHPEVAEFLGSCLYDCITKYDEV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
