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Report for Sequence Feature Glyma11g32285

Feature Type:gene_model
Chromosome:Gm11
Start:33830811
stop:33834055
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma11g32285
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G35730AT Annotation by Michelle Graham. TAIR10: EXS (ERD1/XPR1/SYG1) family protein | chr5:13893941-13896821 FORWARD LENGTH=457 SoyBaseE_val: 3.00E-109ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0016021GO-cc Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR10783Panther XENOTROPIC AND POLYTROPIC MURINE LEUKEMIA VIRUS RECEPTOR JGI ISS
PTHR10783:SF9Panther XENOTROPIC AND POLYTROPIC MURINE LEUKEMIA VIRUS RECEPTOR-RELATED JGI ISS
PF03124PFAM EXS family JGI ISS
UniRef100_G7IKL2UniRef Annotation by Michelle Graham. Most informative UniRef hit: Xenotropic and polytropic retrovirus receptor n=1 Tax=Medicago truncatula RepID=G7IKL2_MEDTR SoyBaseE_val: 2.00E-125ISS
UniRef100_UPI000233CB0FUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233CB0F related cluster n=1 Tax=unknown RepID=UPI000233CB0F SoyBaseE_val: 2.00E-145ISS

Expression Patterns of Glyma11g32285
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g32285 not represented in the dataset
Glyma11g32285 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma11g32285 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.11g206000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma11g32285
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma11g32285
>Glyma11g32285.1   sequence type=CDS   gene model=Glyma11g32285   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTGCTCTTATATGATGCTGCTGTAATGGTTTTGATATTTCCCTTTGATATCTTTTATTTTTCATCTAGATATTTCTTCTTAAGGACACTCTGGCGAATAGTTTTTCCATTACAGGCAATATCATTCGCAGATTTTTTCTTGGCTAATATCTTAACTTCCATGGCAAAGGTCTTTTCTGACTTGGAGCGTTCAGTTTGTAGAATGGTCCATCGACAGGTTGCCACAATTGCTTGGTTGGAAGCTGATTCTGTTTGTGGTAGCCACTCTGTTGCAATCCCTTTGGTTCTTGTCTTGCCTTATCTTTTCCGTTTAAACCAATGTCTCCGGCAGTACAAAGATACTGGAGAGAAAACTACTCTTCTGAATGCTTTGAAATATTCGACTGCAGTGCCTATGATTTTTCTTTCTGCCCTTAAATATCACGTCTTCTTCCTTGAGAGGTGGACAAACTTTTATAGGCCTCTCTGGCTTCTGTCAGGTGTTGTGAACTCATCATACTCCTTCTACTGGGATGTGAATCGAGATTGGGACCTAAGTGGCTTCACTCGAATATTCAAGTTTAACAAGCCACATCTGTTCTCACATATGTTACATGGAAGGAGATGG
Predicted protein sequences of Glyma11g32285
>Glyma11g32285.1   sequence type=predicted peptide   gene model=Glyma11g32285   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
VLLYDAAVMVLIFPFDIFYFSSRYFFLRTLWRIVFPLQAISFADFFLANILTSMAKVFSDLERSVCRMVHRQVATIAWLEADSVCGSHSVAIPLVLVLPYLFRLNQCLRQYKDTGEKTTLLNALKYSTAVPMIFLSALKYHVFFLERWTNFYRPLWLLSGVVNSSYSFYWDVNRDWDLSGFTRIFKFNKPHLFSHMLHGRRW






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