Glyma11g32112 - SoyBase

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Report for Sequence Feature Glyma11g32112

Feature Type:	gene_model
Chromosome:	Gm11
Start:	33468664
stop:	33469454
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g32112

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G45400	AT	Annotation by Michelle Graham. TAIR10: NAD(P)-binding Rossmann-fold superfamily protein \| chr2:18703960-18706235 REVERSE LENGTH=364	SoyBase	E_val: 4.00E-19	ISS
GO:0009813	GO-bp	Annotation by Michelle Graham. GO Biological Process: flavonoid biosynthetic process	SoyBase	N/A	ISS
GO:0010422	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of brassinosteroid biosynthetic process	SoyBase	N/A	ISS
GO:0016126	GO-bp	Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process	SoyBase	N/A	ISS
GO:0016131	GO-bp	Annotation by Michelle Graham. GO Biological Process: brassinosteroid metabolic process	SoyBase	N/A	ISS
GO:0016132	GO-bp	Annotation by Michelle Graham. GO Biological Process: brassinosteroid biosynthetic process	SoyBase	N/A	ISS
GO:0044237	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular metabolic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0016614	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on CH-OH group of donors	SoyBase	N/A	ISS
GO:0050662	GO-mf	Annotation by Michelle Graham. GO Molecular Function: coenzyme binding	SoyBase	N/A	ISS
PTHR10366	Panther	NAD DEPENDENT EPIMERASE/DEHYDRATASE	JGI		ISS
PTHR10366:SF82	Panther	UDP-GLUCURONATE 5-EPIMERASE-RELATED	JGI		ISS
PF05368	PFAM	NmrA-like family	JGI		ISS
UniRef100_G7L425	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Leucoanthocyanidin reductase n=2 Tax=Medicago truncatula RepID=G7L425_MEDTR	SoyBase	E_val: 6.00E-35	ISS
UniRef100_UPI000233C986	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233C986 related cluster n=1 Tax=unknown RepID=UPI000233C986	SoyBase	E_val: 2.00E-60	ISS

Expression Patterns of Glyma11g32112

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g32112 not represented in the dataset	Glyma11g32112 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma11g32112 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma11g32112

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma11g32112

Limit To All Plant Sequences

>Glyma11g32112.2   sequence type=transcript   gene model=Glyma11g32112   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAACGTAAGACTTCATGTATCTAGCCTAACTCTTTATATATCACTAGGCTTGTAAAGTCTAGTGGGGGTGAGTATTACAAGACAATTTAACAATTGATGCAATGAAAAACATTAAAAAATGAAGATAAAATACTGTATCTTGTAGCCATGATTGGGAAAACAAGCCATAAGCATAGAGTTTAATTGAAATCTATTGTCAGTTGAAACTTAGTTATCAGTGGAAAAATGAAGGAAGGGTGCAGCAAAGTATGCGTCACAGGAGCTAGTGGTTGCATAGCTTCCTCTCTGGTGAAGAAGCTCTTGGCCAAGGGTCACAGCGTCCATGCAACTCTCAGAGACTTGAAGAATGAGTCAAAGGTGAGCCTCTTAAAGAGCCTTCCACAATCAGAAGGGAAACTAGTGTTGTTTGAAGCTGATATTTACAACCCAAATGACTTTGACCTTGCAATTGAAGGCTATGAGTTTGTCTTTCATGTTGCTACTCCTATGATCCATGATCCTGGCTCCTAGCAGTACAAGAATACTTCTGAAGCGGCAGTGGCTGCGTCAAAAAGCATTGCCCTGTCTTGTGTGAGAGCAGGGACGGTGAAGCGTCTCATCTACATCGCGTCTGTTGTTTCTGCTTCTTCTTTG

>Glyma11g32112.3   sequence type=transcript   gene model=Glyma11g32112   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAACGTAAGACTTCATGTATCTAGCCTAACTCTTTATATATCACTAGGCTTGTAAAGTCTAGTGGGGGTGAGTATTACAAGACAATTTAACAATTGATGCAATGAAAAACATTAAAAAATGAAGATAAAATACTGTATCTTGTAGCCATGATTGGGAAAACAAGCCATAAGCATAGAGTTTAATTGAAATCTATTGTCAGTTGAAACTTAGTTATCAGTGGAAAAATGAAGGAAGGGTGCAGCAAAGTATGCGTCACAGGAGCTAGTGGTTGCATAGCTTCCTCTCTGGTGAAGAAGCTCTTGGCCAAGGGTCACAGCGTCCATGCAACTCTCAGAGACTTGAAGAATGAGTCAAAGGTGAGCCTCTTAAAGAGCCTTCCACAATCAGAAGGGAAACTAGTGTTGTTTGAAGCTGATATTTACAACCCAAATGACTTTGACCTTGCAATTGAAGGCTATGAGTTTGTCTTTCATGTTGCTACTCCTATGATCCATGATCCTGGCTCCTAGTACAAGAATACTTCTGAAGCGGCAGTGGCTGCGTCAAAAAGCATTGCCCTGTCTTGTGTGAGAGCAGGGACGGTGAAGCGTCTCATCTACATCGCGTCTGTTGTTTCTGCTTCTTCTTTG

Coding sequences of Glyma11g32112

Limit To All Plant Sequences

>Glyma11g32112.1   sequence type=CDS   gene model=Glyma11g32112   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGGAAGGGTGCAGCAAAGTATGCGTCACAGGAGCTAGTGGTTGCATAGCTTCCTCTCTGGTGAAGAAGCTCTTGGCCAAGGGTCACAGCGTCCATGCAACTCTCAGAGACTTGACAGAGAATGAGTCAAAGGTGAGCCTCTTAAAGAGCCTTCCACAATCAGAAGGGAAACTAGTGTTGTTTGAAGCTGATATTTACAACCCAAATGACTTTGACCTTGCAATTGAAGGCTATGAGTTTGTCTTTCATGTTGCTACTCCTATGATCCATGATCCTGGCTCCTAG

>Glyma11g32112.2   sequence type=CDS   gene model=Glyma11g32112   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGGAAGGGTGCAGCAAAGTATGCGTCACAGGAGCTAGTGGTTGCATAGCTTCCTCTCTGGTGAAGAAGCTCTTGGCCAAGGGTCACAGCGTCCATGCAACTCTCAGAGACTTGAAGAATGAGTCAAAGGTGAGCCTCTTAAAGAGCCTTCCACAATCAGAAGGGAAACTAGTGTTGTTTGAAGCTGATATTTACAACCCAAATGACTTTGACCTTGCAATTGAAGGCTATGAGTTTGTCTTTCATGTTGCTACTCCTATGATCCATGATCCTGGCTCCTAG

>Glyma11g32112.3   sequence type=CDS   gene model=Glyma11g32112   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGGAAGGGTGCAGCAAAGTATGCGTCACAGGAGCTAGTGGTTGCATAGCTTCCTCTCTGGTGAAGAAGCTCTTGGCCAAGGGTCACAGCGTCCATGCAACTCTCAGAGACTTGAAGAATGAGTCAAAGGTGAGCCTCTTAAAGAGCCTTCCACAATCAGAAGGGAAACTAGTGTTGTTTGAAGCTGATATTTACAACCCAAATGACTTTGACCTTGCAATTGAAGGCTATGAGTTTGTCTTTCATGTTGCTACTCCTATGATCCATGATCCTGGCTCCTAG

Predicted protein sequences of Glyma11g32112

Limit To All Plant Sequences

>Glyma11g32112.1   sequence type=predicted peptide   gene model=Glyma11g32112   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKEGCSKVCVTGASGCIASSLVKKLLAKGHSVHATLRDLTENESKVSLLKSLPQSEGKLVLFEADIYNPNDFDLAIEGYEFVFHVATPMIHDPGS*

>Glyma11g32112.2   sequence type=predicted peptide   gene model=Glyma11g32112   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKEGCSKVCVTGASGCIASSLVKKLLAKGHSVHATLRDLKNESKVSLLKSLPQSEGKLVLFEADIYNPNDFDLAIEGYEFVFHVATPMIHDPGS*

>Glyma11g32112.3   sequence type=predicted peptide   gene model=Glyma11g32112   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKEGCSKVCVTGASGCIASSLVKKLLAKGHSVHATLRDLKNESKVSLLKSLPQSEGKLVLFEADIYNPNDFDLAIEGYEFVFHVATPMIHDPGS*

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