SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G55150 | AT | Annotation by Michelle Graham. TAIR10: DEA(D/H)-box RNA helicase family protein | chr1:20574634-20577141 FORWARD LENGTH=501 | SoyBase | E_val: 6.00E-112 | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0004386 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: helicase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0008026 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP-dependent helicase activity | SoyBase | N/A | ISS |
| KOG0331 | KOG | ATP-dependent RNA helicase | JGI | ISS | |
| PTHR24031 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24031:SF123 | Panther | PREDICTED PROTEIN | JGI | ISS | |
| PF00270 | PFAM | DEAD/DEAH box helicase | JGI | ISS | |
| PF00271 | PFAM | Helicase conserved C-terminal domain | JGI | ISS | |
| UniRef100_I1LLY6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LLY6_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q9LKL6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: DEAD box protein P68 n=1 Tax=Pisum sativum RepID=Q9LKL6_PEA | SoyBase | E_val: 0 | ISS |
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Glyma11g31380 not represented in the dataset |
Glyma11g31380 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma18g05805 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g199100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g31380.1 sequence type=CDS gene model=Glyma11g31380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCGTATGTGCCTCCGCACCTCAGAAACCCGAGTTCCACCACCGTCGCCACCGCCAGAACCCCCTCCGTAACCCTAGACAACCACCACCACCACCACCACAAGCTCGCATTCGCCTCCAACACCACCACCAATTGCTCTCCATCTCTCTCCTCCTTCCACAACAATGCCTCTCGCCGGAGCTCCGCCGCGCCTCCCTCGCCGCGGATTCTCGCCAACCCCGACACCATCTTCCCCCAATGGCAACCCTCCGAACGCGTTTCCCGCATGACTCCGGAACAGATTGAAGAGGTCCGGTCCAGGCTTAATCTTGATGTTGCTGTCGCATCTGACTCTCCTCCTGCACCTGCTCCAATAGAATCGTTTACTGATATGTGTTTGCATCCGAGTATCATGAAGGACATTGCTTACCATGAATACACCAGGCCAACTTCGATCCAGGCACAGGCCATGCCAATTGCTCTCAGTGGAAGGGATCTATTGGGTTGTGCTGAAACCGGTAGTGGAAAGACTGCAGCTTTCACAATTCCTATGATACAGCATTGCTTGGCCCAACATCCCATTCGGCGCAATGATGGTCCCCTGGCATTAGTTTTGGCTCCTACGAGAGAACTTGCTCAACAAATAGAAAAAGAGGTTAAAGCTTTTAGCAGATCTCTTGAGTCATTAAAAACTGCCATAGTTGTGGGCGGAACCAACATTGAAAAGCAGAGGTCTGAACTAAGAGCTGGAGTTGAAATAGCAGTTGCCACCCCTGGAAGATTCATTGATCATTTACAACAAGGCAACACTTCCCTCTCCAGAATTTCTTTTGTTGTTCTAGATGAGGCAGATAGAATGCTTGATATGGGTTTTGAACCACAGATAAGAGAGGTAATGAGAAATCTTCCAGAGAAGCATCAAACACTGCTGTTTAGTGCGACTATGCCTGTGGAGATTGAAGAATTATCAAAAGAGTACTTAGCTAACCCAGTGCAAGTGAAGGTGGGGAAAGTGAGTAGCCCAACAACTAATGTTTCACAAACTCTTGTGAAAATTTCTGAAAATGAGAAGATTGATCGGCTTCTAGATTTGCTTGTAGAGGAGGCATCACAGGCCGAAAAATGTGGTCATCCATGTCCATTAACAATTGTGTTTGTTGAGAGGAAGACAAGGTGTGATGAAGTTGCTGAAGCATTGGTAGCTCAAGGATTATCTGCAGTTTCTCTTCATGGTGGTCGCAGTCAGAGTGAAAGAGAAGCTGCCTTGCATGATTTTCGGAGTGGCTCCACCAACATTTTGGTTGCCACTGATGTCGCGTCTCGTGGCTTGGATGTCACAGGAGTGTCACATGTCATTAATCTAGATCTTCCAAAGACCATGGAAGATTATGTACACCGGATTGGAAGGACAGGGCGTGCGGGATCAACTGGCTTAGCTACTTCATTTTACACTGATCGCGACATGTTCCTCGTGGCAAATATAAGGAAAGCAATAGCTGATGCAGAATCTGGGAACACACTGACATTTGCAACCGGAAAGGTTGCTAGAAGGAAGGAGAAAGAAGCAGCAGCTGCACAAAAAGAGGCAAATATTGCTTTATCCAAACAGTTAGGATTGGGAGCTGCTTCAATGAACATTGAAGATAAATATAAATTCATGATTACTGCCACAAACACTAAAAAAGAGGGAGCAGCAGATAGTGCCTGGGATGATTAA
>Glyma11g31380.1 sequence type=predicted peptide gene model=Glyma11g31380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSYVPPHLRNPSSTTVATARTPSVTLDNHHHHHHKLAFASNTTTNCSPSLSSFHNNASRRSSAAPPSPRILANPDTIFPQWQPSERVSRMTPEQIEEVRSRLNLDVAVASDSPPAPAPIESFTDMCLHPSIMKDIAYHEYTRPTSIQAQAMPIALSGRDLLGCAETGSGKTAAFTIPMIQHCLAQHPIRRNDGPLALVLAPTRELAQQIEKEVKAFSRSLESLKTAIVVGGTNIEKQRSELRAGVEIAVATPGRFIDHLQQGNTSLSRISFVVLDEADRMLDMGFEPQIREVMRNLPEKHQTLLFSATMPVEIEELSKEYLANPVQVKVGKVSSPTTNVSQTLVKISENEKIDRLLDLLVEEASQAEKCGHPCPLTIVFVERKTRCDEVAEALVAQGLSAVSLHGGRSQSEREAALHDFRSGSTNILVATDVASRGLDVTGVSHVINLDLPKTMEDYVHRIGRTGRAGSTGLATSFYTDRDMFLVANIRKAIADAESGNTLTFATGKVARRKEKEAAAAQKEANIALSKQLGLGAASMNIEDKYKFMITATNTKKEGAADSAWDD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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