Glyma11g31120 - SoyBase

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Report for Sequence Feature Glyma11g31120

Feature Type:	gene_model
Chromosome:	Gm11
Start:	32125236
stop:	32127716
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g31120

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G39950	AT	Annotation by Michelle Graham. TAIR10: cytochrome P450, family 79, subfamily B, polypeptide 2 \| chr4:18525311-18527284 FORWARD LENGTH=541	SoyBase	E_val: 0	ISS
GO:0002229	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to oomycetes	SoyBase	N/A	ISS
GO:0006569	GO-bp	Annotation by Michelle Graham. GO Biological Process: tryptophan catabolic process	SoyBase	N/A	ISS
GO:0006952	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response	SoyBase	N/A	ISS
GO:0009414	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to water deprivation	SoyBase	N/A	ISS
GO:0009617	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to bacterium	SoyBase	N/A	ISS
GO:0009625	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to insect	SoyBase	N/A	ISS
GO:0009682	GO-bp	Annotation by Michelle Graham. GO Biological Process: induced systemic resistance	SoyBase	N/A	ISS
GO:0009684	GO-bp	Annotation by Michelle Graham. GO Biological Process: indoleacetic acid biosynthetic process	SoyBase	N/A	ISS
GO:0010120	GO-bp	Annotation by Michelle Graham. GO Biological Process: camalexin biosynthetic process	SoyBase	N/A	ISS
GO:0019344	GO-bp	Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process	SoyBase	N/A	ISS
GO:0019761	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucosinolate biosynthetic process	SoyBase	N/A	ISS
GO:0042742	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to bacterium	SoyBase	N/A	ISS
GO:0052544	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response by callose deposition in cell wall	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0005506	GO-mf	Annotation by Michelle Graham. GO Molecular Function: iron ion binding	SoyBase	N/A	ISS
GO:0009055	GO-mf	Annotation by Michelle Graham. GO Molecular Function: electron carrier activity	SoyBase	N/A	ISS
GO:0016705	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	SoyBase	N/A	ISS
GO:0019825	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxygen binding	SoyBase	N/A	ISS
GO:0020037	GO-mf	Annotation by Michelle Graham. GO Molecular Function: heme binding	SoyBase	N/A	ISS
KOG0156	KOG	Cytochrome P450 CYP2 subfamily	JGI		ISS
PTHR24298	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24298:SF35	Panther		JGI		ISS
PF00067	PFAM	Cytochrome P450	JGI		ISS
UniRef100_B2Y2W4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cytochrome P450 (Fragment) n=1 Tax=Trifolium repens RepID=B2Y2W4_TRIRP	SoyBase	E_val: 0	ISS
UniRef100_I1LLX9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LLX9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma11g31120

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g31120 not represented in the dataset	Glyma11g31120 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g31120

Paralog	Evidence	Comments
Glyma18g05860	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g31120 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g197300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g31120

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma11g31120

Limit To All Plant Sequences

>Glyma11g31120.1   sequence type=CDS   gene model=Glyma11g31120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCACTCCCCTTTTCTTTTGTTGTCAAATCTTCAAGGCTTTTGGCCTTCTTTGCTTGCTATGATCGCTTGCTTTATCATTATGATCAAAGCCCTAAGAAACAACTTCATTGAGAACTATTCCAACAAGCAAAAACCAAAACTACCCCCAGGCCCGAAACCATGGCCTATAGTTGGAAACCTTCCCGAAATGCTTGCAAACAAACCTGCCCATAAGTGGATACACAATCTCATGAAAGAAATGAACACCGAAATTGCGTGTATCCGCTTAGGAAACGCCTATGTTATCCCTGTGACATGCCCCACCATTGCCAGTGAGTTCTTGAGAAAACAAGATGCAACTTTTGCATCAAGGTCACAAACTGTGTCCACTGATCTCATTAGTAATGGATATTCAACCGCCGTTTTTGGGCCCTTTGGAGCCCAATGGAAGAAAATGAAGAAAATTTTAACCAATAATTTGCTTTCCCCACACAAACACCTATGGCTGCATGGCCAAAGGACTGAAGAAGCAGACAACCTTATGTTTCACGTGTACAACAAGTGCAAAAATGTGAACGATGGTGTTGGTGGCCTTGTGAATATCAGAAGTGTTGCAAGGCATTATTGTGGTAACCTAACCAGGAAAATTATTTTCAATACAAGGTACTTTGGGAAGGGTAGAGAGGATGGAGGGCCAGGTTTTGAGGAAGTGGAACATGTTGATTCCATCTTCCATTTGCTCGAGTATGTTAATGCCTTTTCTGTTTCTGATTATGTGCCATGCTTGAGGGGACTTGACTTGGATGGCCATGAAAAGAAGGTGAAGGAAGCTTTAAAGATCATCAAGAAGTATCATGATCCCATTGTTCAAGAGAGAATTAAACTGTGGAATGATGGATTAAAGGTTGATGAAGAAGACTGGCTTGATGTTCTGGTCTCCTTGAAAGATTCCAACAATAACCCATCATTGACATTGGAGGAGATCAATGCACAAATTATAGAATTGATGATTGCAACAATTGACAATCCATCAAATGCTTTTGAATGGGCACTTGCTGAAATGATAAACCAACCGGAGTTACTCCACCGAGCCGTTGAAGAATTGGATAGTGTGGTAGGAAAAGAGAGACTGGTCCAAGAATCAGATATACCTAAACTCAACTATGTGAAGGCTTGTGCAAGGGAAGCTTTTCGCCTTCATCCCATTTCACCTTTTATTCCTCCCCATGTCTCTATGAGTGACACAATGGTGGCAAATTACTTCATCCCTAAGGGTAGCCATGTAATGCTAAGCAGACAAGAGCTTGGGAGGAACCCAAAAGTGTGGAATGAAACCTACAAGTTCAAACCTGAACGCCACCTCAAGAGTGATGGGTCTGATGTGGATTTGACAGAACCAAATTTGAAGTTCATATCATTTAGCACAGGAAGGCGTGGCTGTCCCGGAGTGATGCTTGGCACCACAATGACAGTGATGCTATTTGCTAGATTACTCCATGGCTTCACTTGGACTGCACCACCTAATGTTTCATCAATCAACCTTGCTGAGTCCAACGATGATATCCTTCTTGCAGAACCACTTGTGGCAGTGGCTAAGCCAAGATTAGCATCAGAGCTATACCAACTTTAA

Predicted protein sequences of Glyma11g31120

Limit To All Plant Sequences

>Glyma11g31120.1   sequence type=predicted peptide   gene model=Glyma11g31120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAHSPFLLLSNLQGFWPSLLAMIACFIIMIKALRNNFIENYSNKQKPKLPPGPKPWPIVGNLPEMLANKPAHKWIHNLMKEMNTEIACIRLGNAYVIPVTCPTIASEFLRKQDATFASRSQTVSTDLISNGYSTAVFGPFGAQWKKMKKILTNNLLSPHKHLWLHGQRTEEADNLMFHVYNKCKNVNDGVGGLVNIRSVARHYCGNLTRKIIFNTRYFGKGREDGGPGFEEVEHVDSIFHLLEYVNAFSVSDYVPCLRGLDLDGHEKKVKEALKIIKKYHDPIVQERIKLWNDGLKVDEEDWLDVLVSLKDSNNNPSLTLEEINAQIIELMIATIDNPSNAFEWALAEMINQPELLHRAVEELDSVVGKERLVQESDIPKLNYVKACAREAFRLHPISPFIPPHVSMSDTMVANYFIPKGSHVMLSRQELGRNPKVWNETYKFKPERHLKSDGSDVDLTEPNLKFISFSTGRRGCPGVMLGTTMTVMLFARLLHGFTWTAPPNVSSINLAESNDDILLAEPLVAVAKPRLASELYQL*

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