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Report for Sequence Feature Glyma11g30300

Feature Type:gene_model
Chromosome:Gm11
Start:31225516
stop:31228020
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma11g30300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G05120AT Annotation by Michelle Graham. TAIR10: Major facilitator superfamily protein | chr4:2632886-2634824 REVERSE LENGTH=418 SoyBaseE_val: 1.00E-62ISS
GO:0006810GO-bp Annotation by Michelle Graham. GO Biological Process: transport SoyBaseN/AISS
GO:0015858GO-bp Annotation by Michelle Graham. GO Biological Process: nucleoside transport SoyBaseN/AISS
GO:0015864GO-bp Annotation by Michelle Graham. GO Biological Process: pyrimidine nucleoside transport SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0016021GO-cc Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane SoyBaseN/AISS
GO:0005337GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleoside transmembrane transporter activity SoyBaseN/AISS
PTHR10332Panther EQUILIBRATIVE NUCLEOSIDE TRANSPORTER ENT (SLC29) JGI ISS
PTHR10332:SF3Panther EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 4-RELATED JGI ISS
PF01733PFAM Nucleoside transporter JGI ISS
UniRef100_B9H1Z9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Equilibrative nucleoside transporter n=1 Tax=Populus trichocarpa RepID=B9H1Z9_POPTR SoyBaseE_val: 6.00E-71ISS
UniRef100_I1ME90UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1ME90_SOYBN SoyBaseE_val: 3.00E-80ISS

Expression Patterns of Glyma11g30300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g30300 not represented in the dataset
Glyma11g30300 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma11g30300 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma11g30300
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma11g30300
>Glyma11g30300.1   sequence type=CDS   gene model=Glyma11g30300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AACCTTGCTGTTGTTGGCATTCAAACAAAGACTGATGATCAAGGTGGATATGATAGCAAAAAAGAAGAGCAGTTGAGCAACAAACAATTATTTGTTGAGAACCATGATTATGTAGTTGGTTTATTTTATATATTTGTGGTAACACTGTCAATCTTTCCTGGATTTTTGTATGAAAATACTGGAACACATCAGTTAGGCACATGCAAACATTTTCTACTTAATTACCCAGTTGTTTTAATTGCTATGTATAATGTGGTGGATTTCATACCAATATATATTCCCCTTGTGCCATGGCTAAAGTTGGAATCAAGAAAGGGTTTACTAATAGCAGTGTTTTCTAGATTCTTGCTGATCCCAGCATTCTACTTCACAGCAAAATATGGTGACCAAGGATGGATGATTCTGCTAGCCTCCTTCTTGGGACTCACCAATGGCTATCTCACTGTTTGTGTTCTCACTGTGGCACCAAGAGGTTACAAGGCAAGCAAACAGGTTGATGCTATGGTGGAACTGTCAAAGATATGCCTTCTTCTACGAATATTTCCTCCTGAGGAGTCTTAG
Predicted protein sequences of Glyma11g30300
>Glyma11g30300.1   sequence type=predicted peptide   gene model=Glyma11g30300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
NLAVVGIQTKTDDQGGYDSKKEEQLSNKQLFVENHDYVVGLFYIFVVTLSIFPGFLYENTGTHQLGTCKHFLLNYPVVLIAMYNVVDFIPIYIPLVPWLKLESRKGLLIAVFSRFLLIPAFYFTAKYGDQGWMILLASFLGLTNGYLTVCVLTVAPRGYKASKQVDAMVELSKICLLLRIFPPEES*






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