Glyma11g30090 - SoyBase

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Report for Sequence Feature Glyma11g30090

Feature Type:	gene_model
Chromosome:	Gm11
Start:	30961361
stop:	30967845
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g30090

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G58370	AT	Annotation by Michelle Graham. TAIR10: P-loop containing nucleoside triphosphate hydrolases superfamily protein \| chr5:23593358-23595645 FORWARD LENGTH=465	SoyBase	E_val: 2.00E-165	ISS
GO:0000917	GO-bp	Annotation by Michelle Graham. GO Biological Process: barrier septum assembly	SoyBase	N/A	ISS
GO:0019243	GO-bp	Annotation by Michelle Graham. GO Biological Process: methylglyoxal catabolic process to D-lactate	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0005525	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTP binding	SoyBase	N/A	ISS
KOG2486	KOG	Predicted GTPase	JGI		ISS
PTHR11649	Panther	MSS1/TRME-RELATED GTP-BINDING PROTEIN	JGI		ISS
PTHR11649:SF46	Panther		JGI		ISS
PF01926	PFAM	GTPase of unknown function	JGI		ISS
UniRef100_B9RVE2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: GTP binding protein, putative n=1 Tax=Ricinus communis RepID=B9RVE2_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI000233C688	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233C688 related cluster n=1 Tax=unknown RepID=UPI000233C688	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma11g30090

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g30090

Paralog	Evidence	Comments
Glyma18g06145	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g30090 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g160900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g30090

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma11g30090

Limit To All Plant Sequences

>Glyma11g30090.1   sequence type=CDS   gene model=Glyma11g30090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTTCTGAGGATAGTTTAAGGAAGAAGCTAAGAAAGAATGCCACTAAACCTGTAGTAAGCACTTCTAGGAACTTTATTAGAGCTAAGAAGGATGAAAATTCTTTTGAGAAAAATGGGGCTTTTGGCAGAGGAAATGAGTCTGAGGGAAAGTTGAAGAAAAGGGGGAATTTTAAAGGAATGCGATCGGGTGAAGAAGTTTTGGAGAGGGGAAAGTTGAGGACTTTGGATTCTGGTGGGAAGAAGAAGAGGATATATGCTAAGAAAGGAGGGGATAAAAATGTGAAGTTAGAGAATGGTATGGAAGTATCTAAGAAGAGAACTTTGATTAGGAACGGTGAGAAGCGAGTGAAAGATGTACCCGTTGAAGGAAATGATGGCCACCATACAATGTGGGATCATGATAAGACAAGGAATGGCGGCTTTAAAGTGAAGCGATCGACTCAAATGAGGAAGGAAAGGAAGGAAGATGTTGTGTTGGCTATTGCAAAGCAGAAAGGCAAGGCGGAGGATGCGGGGAAAATTGGATTAGTTGGGACAGAAGATCAAGGAAGTGGTTCGGTGAAGAGAAGTAGAGACAAGAAAACTGAATTGAGCAAAGGGAAAAACCAAGAAGTTGTATCTGGTTCAAGTTTTGCCAAGAAAAAAGCCAGAGATAGAACAGGGTTGGATGATGATGATGCTGAGATGCTACATGATCGTCCGAAGAAGAAGAAAAGGGTGATAAAGATTGACCCACATGATATCTCAAACAAGAGACTAGATGATGGCATTGGTGTTAATGGAAGTAAAGAGGAGAAGGAGAAAGAAAAGGAGTCTGAGAAAGAGCCTAAAATGTCCAAGAATGCCCAGTTCCGTGCAATACAGCCTAGCCCTTTGATACTTTCCTTTGTGGAAAAAAATCTTTTGGGCAGGAGACGCATGATTGACTTAAAAAGGGCAGGTTACAATATAGATCTTTCTGCACCCTTAGATAATATTCCCTTCTCTAGCAGTTCAGAAAGAGAGAAAATTGAAGAAAATATTTTTAGGAATAAATTGGATTTTTTTGCTGCTGCAAAGGTCTCATCATCATTTCCACCTCCTAATCTTCCAGAGATTGCATTTGCTGGAAGGTCAAATGTCGGGAAGTCATCTCTTCTCAATGCACTCACTAGACAATGGGGGGTTGTGCGGACATCAGACAAGCCCGGCCTTACCCAGACAATCAACTTCTTCAATCTGGGAACAAAGCATTGCTTAGTTGATTTGCCAGGATATGGATTTGCTTATGCAAAAGAAGAAGTGAAAGAATCTTGGGAGGAGCTTGTGAAGGAGTATGTGTCCACAAGAGTTGGTCTCAGACGAGTATGCCTTCTGATTGATACAAAGTGGGGTATGAAACCAAGAGATCTTGAACTAATTGAATTAATGGAAAGATCAAAAACTAAATATCAGATTGTATTAACTAAGACAGATGTGGTCTTTCCAATTGATGTGGCAAGACGTGCCATGCAAATTGAAGAGAGCCTCTTCCAGAACAAGTCTGTAGTTAAGCCTGTGATGATGGTAAGCTCAAAATCTGGAGCAGGAATTCGAAGCCTGAGAACGGCCCTAGCCAACATAACTCGATTTGCCAGAAGATTGTAG

Predicted protein sequences of Glyma11g30090

Limit To All Plant Sequences

>Glyma11g30090.1   sequence type=predicted peptide   gene model=Glyma11g30090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPSEDSLRKKLRKNATKPVVSTSRNFIRAKKDENSFEKNGAFGRGNESEGKLKKRGNFKGMRSGEEVLERGKLRTLDSGGKKKRIYAKKGGDKNVKLENGMEVSKKRTLIRNGEKRVKDVPVEGNDGHHTMWDHDKTRNGGFKVKRSTQMRKERKEDVVLAIAKQKGKAEDAGKIGLVGTEDQGSGSVKRSRDKKTELSKGKNQEVVSGSSFAKKKARDRTGLDDDDAEMLHDRPKKKKRVIKIDPHDISNKRLDDGIGVNGSKEEKEKEKESEKEPKMSKNAQFRAIQPSPLILSFVEKNLLGRRRMIDLKRAGYNIDLSAPLDNIPFSSSSEREKIEENIFRNKLDFFAAAKVSSSFPPPNLPEIAFAGRSNVGKSSLLNALTRQWGVVRTSDKPGLTQTINFFNLGTKHCLVDLPGYGFAYAKEEVKESWEELVKEYVSTRVGLRRVCLLIDTKWGMKPRDLELIELMERSKTKYQIVLTKTDVVFPIDVARRAMQIEESLFQNKSVVKPVMMVSSKSGAGIRSLRTALANITRFARRL*

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