Glyma11g30050 - SoyBase

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Report for Sequence Feature Glyma11g30050

Feature Type:	gene_model
Chromosome:	Gm11
Start:	30951070
stop:	30953751
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g30050

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G30350	AT	Annotation by Michelle Graham. TAIR10: Excinuclease ABC, C subunit, N-terminal \| chr2:12934237-12935742 REVERSE LENGTH=368	SoyBase	E_val: 6.00E-96	ISS
GO:0006281	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA repair	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0004518	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nuclease activity	SoyBase	N/A	ISS
PTHR20208	Panther	FAMILY NOT NAMED	JGI		ISS
PF01541	PFAM	GIY-YIG catalytic domain	JGI		ISS
UniRef100_B9RVE6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Nuclease, putative n=1 Tax=Ricinus communis RepID=B9RVE6_RICCO	SoyBase	E_val: 4.00E-95	ISS
UniRef100_I1LLV5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LLV5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma11g30050

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g30050

Paralog	Evidence	Comments
Glyma18g06170	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g30050 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g161200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g30050

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma11g30050

Limit To All Plant Sequences

>Glyma11g30050.1   sequence type=CDS   gene model=Glyma11g30050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGGAAGAGAAAGGTTGCATCTGTGATTGAAGAAGAAGAAAGTGTGCAAAACCATGGCCATAATAACCAAAACGAAAACGAGGATTGTGAAGGAAATGGGTTCTTTGCTTGCTACCTATTGACCTCTCTCAGCCCCCGCTTCAAAGGCCACACTTACATCGGATTCACAGTGAATCCGAGGCGCCGGATCAGGCAACACAATGGGGAAATTGGGTGTGGAGCTTGGAGAACGAAGAAGAGGAGGCCTTGGGAGATGGTTTTGTGTATCTATGGCTTCCCAACAAATGTCTCAGCTCTTCAGTTTGAATGGGCTTGGCAGCACCCTGTTGAATCATTGGCTGTAAGGAAGGCAGCTGTGGAATTTAAATCCCTCTCTGGAATTGCCAACAAGATTAAACTTGCATACACAATGCTCACCCTTCCATCCTGGCAGAGCATGAATATCACTGTGAACTTCTTCTCCACTAAGTACATGAAACACTGTGCTGGTTGCCCGAGCTTGCCAGTGCACATGAAGACCAAGTTTGGCTCACTGGATGAACTTCCATGTTATAATAAAGGCATTGATGGTTTGTCAGAGAATGAAGATGATACTATTGATGAAGTACAATTTGATGATAATAATATTAGTACTAGTGGTTCTGTTCCAGATGTGAGCGATGATTTAGTCACTCCTGATTCACCCCAAAATCCAAATGACGGGGACAAGATTAGTGAAGCATTTGAGTGGAACAAAGAATCTGAAGCAAGAGAACCTCCACTAGGTAATTCATTTGCTTCACAAGAGCAGAGCCAACTGTTTAGTTCTACAACGCCACTGACAATGAAATCATCATCAACAACTTCATTACAAAGAGCTGAGATTATTGAAGAAGACGATTTTATGAGTGTGATGAATAAGAGTGATGCTGATTTGAGTCAACCAGAACCAGAGCAATCAGGTGCTACTACATTGGTAGCCAATAAAAATCGAGATGTCGGCCGCACATTTGTTGTGCCCCATGAAACTGAAATTATCGATTTGTCAACCCCCTCTCCTAGTTGCAGAAGCGTTTTGGATAGGAAGAAGAGAAGAGTTTCCTCTTCTGTTGGTACTGATTTTATTGACTTAACCAACTCCCCCAACTTCATTGAATTGTAA

Predicted protein sequences of Glyma11g30050

Limit To All Plant Sequences

>Glyma11g30050.1   sequence type=predicted peptide   gene model=Glyma11g30050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRKRKVASVIEEEESVQNHGHNNQNENEDCEGNGFFACYLLTSLSPRFKGHTYIGFTVNPRRRIRQHNGEIGCGAWRTKKRRPWEMVLCIYGFPTNVSALQFEWAWQHPVESLAVRKAAVEFKSLSGIANKIKLAYTMLTLPSWQSMNITVNFFSTKYMKHCAGCPSLPVHMKTKFGSLDELPCYNKGIDGLSENEDDTIDEVQFDDNNISTSGSVPDVSDDLVTPDSPQNPNDGDKISEAFEWNKESEAREPPLGNSFASQEQSQLFSSTTPLTMKSSSTTSLQRAEIIEEDDFMSVMNKSDADLSQPEPEQSGATTLVANKNRDVGRTFVVPHETEIIDLSTPSPSCRSVLDRKKRRVSSSVGTDFIDLTNSPNFIEL*

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