Report for Sequence Feature Glyma11g29900
Feature Type: gene_model
Chromosome: Gm11
Start: 30776024
stop: 30777160
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma11g29900
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G30300 AT
Annotation by Michelle Graham. TAIR10: Major facilitator superfamily protein | chr2:12919401-12921222 FORWARD LENGTH=500
SoyBase E_val: 4.00E-94 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PTHR21576 Panther
UNCHARACTERIZED NODULIN-LIKE PROTEIN
JGI ISS
PTHR21576:SF11 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF06813 PFAM
Nodulin-like
JGI ISS
UniRef100_Q94D97 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Nodulin-like protein n=3 Tax=Oryza sativa RepID=Q94D97_ORYSJ
SoyBase E_val: 3.00E-102 ISS
UniRef100_UPI000233C684 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233C684 related cluster n=1 Tax=unknown RepID=UPI000233C684
SoyBase E_val: 0 ISS
Expression Patterns of Glyma11g29900
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Gene model name correspondences to Glyma11g29900 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.11g162000 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma11g29900
Coding sequences of Glyma11g29900
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma11g29900.2 sequence type=CDS gene model=Glyma11g29900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTCTCTTCCAAGCTTCTTCACCATCCCTTCTGCTGCTCATCAATGGCTAAGCCTTGTAGGCATCATTTGGCTCCAGGCCATTAATGGAACAAACACCAATTTCCCTGCTTACTCATGCCAGCTGAAACACCTTTCCATATCCCAAGTGCAGCTCAATAACCTTGCCTTTGCTTCTGATGCAGGGAAACATTTTGGCTGGGTTTTTGGTCTTGTTTCTATTTACATCCCCCTCTGGCTAGTCCTCTTGATTGGTTCAACTCTTGGCTTAATTGGTTATGGTGTGCAATATCTCTTCATAACCAACCATATTTCCTCTTTGTCCTATTGGCATGTGTTCTTGCTAACTTTTCTTGCTGGCAATAGCATATGTTGGATTAACACAGTATGCTATGTTGTCACGATAAGGAATTTCCCATCTCAAGGCCAAGTTGCTGTGGGACTAACAACTAGTTATCAATGGCTAAGTGCAAAGATTTATACTAACATTGTTGATGTTTTTTCTCCACACAAGAAGGCTAGAACCTTTCTCTTCCTTAACTCTCTCTTGCCCTTTATAGTTAGCCTAATAGCAGCTCCTCTAGCCAGAGAAATTGAGAACACAGGTCCTAAGAACATTGATTTTGAGTTTGCTTTATTGTTTGTTATTACAGTTGCCACTGGAATATATGCTGTGATGACCAGCTTGCAATTTGTCACAAGCAAAATGTCCTCACTGGTTATCCGGAATGGTATTCTAGTATCTCTTCTTTTGCCTCCATTAGTCCCAGTTTCTTTCAAGTTCAAGGAACTAGTTGGATCATGGAATACAAAAAGAGAGAGACTAAGAGTCTACAATTTTACTATGGAGAACACCAATAATGAAGTGTCAGAGGATGAAGATAATAGCATAGAAGGTCAAGTGATTGGTGTTAGAGAAGAAATTGGAGAGACGTTGATGCTTAGAAGAATAGATTTCTGGTTGTATTTCTTCATCTACTTTTTTGGAGCAACAATTGGTTTAGTATATCTCAATAACTTGGGACAAATAGCTGAATCCAGGGGTTTCTCTGGTACTTCATCTTTGGTGTCGTTGTCTTCATCTTTTGGGTTTTTTGGCCGTCTCATTCCATCTCTTTCGGACTACTTCTCCAGGTAA
Predicted protein sequences of Glyma11g29900
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma11g29900.2 sequence type=predicted peptide gene model=Glyma11g29900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSLPSFFTIPSAAHQWLSLVGIIWLQAINGTNTNFPAYSCQLKHLSISQVQLNNLAFASDAGKHFGWVFGLVSIYIPLWLVLLIGSTLGLIGYGVQYLFITNHISSLSYWHVFLLTFLAGNSICWINTVCYVVTIRNFPSQGQVAVGLTTSYQWLSAKIYTNIVDVFSPHKKARTFLFLNSLLPFIVSLIAAPLAREIENTGPKNIDFEFALLFVITVATGIYAVMTSLQFVTSKMSSLVIRNGILVSLLLPPLVPVSFKFKELVGSWNTKRERLRVYNFTMENTNNEVSEDEDNSIEGQVIGVREEIGETLMLRRIDFWLYFFIYFFGATIGLVYLNNLGQIAESRGFSGTSSLVSLSSSFGFFGRLIPSLSDYFSR*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
