|
A newer version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT2G37060 | AT | Annotation by Michelle Graham. TAIR10: nuclear factor Y, subunit B8 | chr2:15576336-15577660 FORWARD LENGTH=173 | SoyBase | E_val: 7.00E-35 | ISS |
GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
GO:0043565 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding | SoyBase | N/A | ISS |
PTHR11064 | Panther | TATA-BINDING PROTEIN-ASSOCIATED PHOSPHOPROTEIN | JGI | ISS | |
PTHR11064:SF9 | Panther | CCAAT-BINDING TRANSCRIPTION FACTOR SUBUNIT A | JGI | ISS | |
PF00808 | PFAM | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | JGI | ISS | |
UniRef100_G7L1Q2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Nuclear transcription factor Y subunit B-3 n=1 Tax=Medicago truncatula RepID=G7L1Q2_MEDTR | SoyBase | E_val: 3.00E-41 | ISS |
UniRef100_G7L1Q2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Nuclear transcription factor Y subunit B-3 n=1 Tax=Medicago truncatula RepID=G7L1Q2_MEDTR | SoyBase | E_val: 3.00E-41 | ISS |
Glyma11g29866 not represented in the dataset |
Glyma11g29866 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Corresponding Name | Annotation Version | Evidence | Comments |
---|
Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g29866.1 sequence type=CDS gene model=Glyma11g29866 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CGCATTGGCCCCGTCGCATATCGCCTTCAACTGCCTCCATCCTCCAAAATTCATCCTATCTTTCATGTGTCGTTGTTGAAGCGCTATCAAGGCCTTACATCATCGAAGGTGTGGTCATCAACATATAACTTCATGGCGCTCTGTTTCATCGATGTAACTCCATCGGGGGTGTGTCCATGTGGCGGCGGCGGAGGCAGCCATGAGAGCGGCGAACACAGTCCTCACTCCAATTTCCGCGAGCAGGACCGCTTCCTCCCTATCGCCAACATCAGCCGCATCATGAAGAAAGCGCTTCCTCCCAATGGGAAAATCGCCAAGGACGCCAAGGAAACTGTGCAGGAATGCGTCTTCGAGTTCATCAGCTTTGTCACCAGCGAGTACACTTCTTTGTTTCTCGCAGCGAGCAATAAGTGTCAAAGAGAGAAGAGGAAAACCATCAACGACAACTGTAACAGGACTATAACAGTGTCAGAGAGAGAAGAGGGCGCTTTCATCATGTTTTTTTTTCATCTCTTACTTTGCAATAGCTAA
>Glyma11g29866.1 sequence type=predicted peptide gene model=Glyma11g29866 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high RIGPVAYRLQLPPSSKIHPIFHVSLLKRYQGLTSSKVWSSTYNFMALCFIDVTPSGVCPCGGGGGSHESGEHSPHSNFREQDRFLPIANISRIMKKALPPNGKIAKDAKETVQECVFEFISFVTSEYTSLFLAASNKCQREKRKTINDNCNRTITVSEREEGAFIMFFFHLLLCNS*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||