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Report for Sequence Feature Glyma11g29854

Feature Type:gene_model
Chromosome:Gm11
Start:30743430
stop:30744869
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma11g29854
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G44530AT Annotation by Michelle Graham. TAIR10: homolog of histone chaperone HIRA | chr3:16116026-16121247 FORWARD LENGTH=1040 SoyBaseE_val: 4.00E-41ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0045814GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of gene expression, epigenetic SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
PTHR13831Panther MEMBER OF THE HIR1 FAMILY OF WD-REPEAT PROTEINS JGI ISS
PF07569PFAM TUP1-like enhancer of split JGI ISS
UniRef100_B9SCR1UniRef Annotation by Michelle Graham. Most informative UniRef hit: WD-repeat protein, putative n=1 Tax=Ricinus communis RepID=B9SCR1_RICCO SoyBaseE_val: 2.00E-45ISS
UniRef100_UPI000233D746UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233D746 related cluster n=1 Tax=unknown RepID=UPI000233D746 SoyBaseE_val: 1.00E-49ISS

Expression Patterns of Glyma11g29854
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g29854 not represented in the dataset
Glyma11g29854 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma11g29854 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.11g162300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma11g29854
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma11g29854
>Glyma11g29854.1   sequence type=CDS   gene model=Glyma11g29854   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTAGCCCTGGCCTCGGTGTCATCTCTGTGGCCGCCAACCCCCTTCGTCACTGCCTCCTCCTCCCTCGGTAACTTCGTTCGCATCTTCGATGTCAATTCCAACGCCACCATTGCAACACTCGAGGCTCCTCCCTCTGAAGTTGAAGTTTCGCAAATGCACTTTGATCCCAAGAGAGAAATAACAGTGCAAGAAACAGAAATTGTGTGCTCTAAGGGCCCTCAAACACTTTGGTCTGCTAGGATATCAGGAAAAGTCACTGTTTTAGCTGGTAATGGAAATTTTTGGAGAGTTGGATGTGAAGATGGATGTCTGCAGATTTACACAAAGTGTGGGAGACGTGCAATGCCTACCATGATGATGGGTTCTGCAGCAACATTTGTAGACTGTGATAAATGTTGGACATTACTGCTGGTCACAAGAAAAGGATCCCTGTACTAG
Predicted protein sequences of Glyma11g29854
>Glyma11g29854.1   sequence type=predicted peptide   gene model=Glyma11g29854   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLALASVSSLWPPTPFVTASSSLGNFVRIFDVNSNATIATLEAPPSEVEVSQMHFDPKREITVQETEIVCSKGPQTLWSARISGKVTVLAGNGNFWRVGCEDGCLQIYTKCGRRAMPTMMMGSAATFVDCDKCWTLLLVTRKGSLY*






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