Glyma11g29830 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma11g29830

Feature Type:	gene_model
Chromosome:	Gm11
Start:	30720390
stop:	30723748
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g29830

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G56220	AT	Annotation by Michelle Graham. TAIR10: transcription regulators \| chr3:20858941-20860302 FORWARD LENGTH=156	SoyBase	E_val: 5.00E-40	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
UniRef100_G7K7C1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor bHLH93 n=1 Tax=Medicago truncatula RepID=G7K7C1_MEDTR	SoyBase	E_val: 2.00E-39	ISS
UniRef100_I1LLU3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LLU3_SOYBN	SoyBase	E_val: 1.00E-110	ISS

Expression Patterns of Glyma11g29830

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g29830

Paralog	Evidence	Comments
Glyma18g06270	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g29830 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g162500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g29830

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma11g29830

Limit To All Plant Sequences

>Glyma11g29830.4   sequence type=transcript   gene model=Glyma11g29830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAGGTCTTAATAATTAGCTTTAGAGAAGAACAAAATTGGTTCAGTGACAATGTGAATATCTCACGAGGAAAAAAACAAAGACCCTTGATCGAAGTTAAAACAATGTTTCATACATTTTGTAATTCCAAAACTGCATCACATGTGATCCACAAGATTCTGTGTCCTCGCCCTCTTTATAAACCATCAAATAATGTTTAGATTTCTTTGCACAAAGTTCTCCTTGTGAGAGAGAGAGTGTGATAAATTTAAGAGAGAGAGAGAATATGGTTTCCAGAGTTCACAAGAGAATAGCCATGTACAGGAACCTACAACTGCTTCGTTCAATCAGATACTCAAATTCGCGCCTTAAAGCCTCAGTGTTACTCGAGCTGTCAGATTACATACAAGGTTTAAAGCAAAAACTGGAAGAATTGAACCAGCTGTTAACAGTGGCAACGGCACGAAAAATCGCTGACTATGATCCAATGCCTAAGCTTGAAGTTGAAACACAAGAAGAGGCTTTTGTGATCAAGGTGCTGAGTGAAAGCAGTTGCCAGGGGTTGCTGGTGTTTATATTGGAAGCCTTTGAAGAGATGGGTCTTGATGTGCTCCAAGCTAGGGTTTCTTGTGCGGACAGCTTCAGTTTAGAAGCCATCGGAAATAATAAAGTAATAATGTGACACCCACATACATAATTATCTAAATCCTAAAAGCAATACTTAATATTGTACTGTGAGTGCAATGTTTGTA

Coding sequences of Glyma11g29830

Limit To All Plant Sequences

>Glyma11g29830.3   sequence type=CDS   gene model=Glyma11g29830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTTCCAGAGTTCACAAGAGAATAGCCATGTACAGGAACCTACAACTGCTTCGTTCAATCAGATACTCAAATTCGCGCCTTAAAGCCTCAGTGTTACTCGAGCTGTCAGATTACATACAAGGTTTAAAGCAAAAACTGGAAGAATTGAACCAGCTGTTAACAGTGGCAACGGCACGAAAAATCGCTGACTATGATCCAATGCCTAAGCTTGAAGTTGAAACACAAGAAGAGGCTTTTGTGATCAAGGTGCTGAGTGAAAGCAGTTGCCAGGGGTTGCTGGTGTTTATATTGGAAGCCTTTGAAGAGATGGGTCTTGATGTGCTCCAAGCTAGGGTTTCTTGTGCGGACAGCTTCAGTTTAGAAGCCATCGGAAATAATAAAGAGAACAATGAAGATACTCACACTTTGGATGCACAACTAGTTGAACAAGTAGTGTCTCAAGCTATTCAAAACTGGTGGGAAGTTTCGCAAATATAA

>Glyma11g29830.4   sequence type=CDS   gene model=Glyma11g29830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTTCCAGAGTTCACAAGAGAATAGCCATGTACAGGAACCTACAACTGCTTCGTTCAATCAGATACTCAAATTCGCGCCTTAAAGCCTCAGTGTTACTCGAGCTGTCAGATTACATACAAGGTTTAAAGCAAAAACTGGAAGAATTGAACCAGCTGTTAACAGTGGCAACGGCACGAAAAATCGCTGACTATGATCCAATGCCTAAGCTTGAAGTTGAAACACAAGAAGAGGCTTTTGTGATCAAGGTGCTGAGTGAAAGCAGTTGCCAGGGGTTGCTGGTGTTTATATTGGAAGCCTTTGAAGAGATGGGTCTTGATGTGCTCCAAGCTAGGGTTTCTTGTGCGGACAGCTTCAGTTTAGAAGCCATCGGAAATAATAAAGTAATAATGTGA

Predicted protein sequences of Glyma11g29830

Limit To All Plant Sequences

>Glyma11g29830.3   sequence type=predicted peptide   gene model=Glyma11g29830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVSRVHKRIAMYRNLQLLRSIRYSNSRLKASVLLELSDYIQGLKQKLEELNQLLTVATARKIADYDPMPKLEVETQEEAFVIKVLSESSCQGLLVFILEAFEEMGLDVLQARVSCADSFSLEAIGNNKENNEDTHTLDAQLVEQVVSQAIQNWWEVSQI*

>Glyma11g29830.4   sequence type=predicted peptide   gene model=Glyma11g29830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVSRVHKRIAMYRNLQLLRSIRYSNSRLKASVLLELSDYIQGLKQKLEELNQLLTVATARKIADYDPMPKLEVETQEEAFVIKVLSESSCQGLLVFILEAFEEMGLDVLQARVSCADSFSLEAIGNNKVIM*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain