Glyma11g29490 - SoyBase

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Report for Sequence Feature Glyma11g29490

Feature Type:	gene_model
Chromosome:	Gm11
Start:	30227045
stop:	30233471
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g29490

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G30200	AT	Annotation by Michelle Graham. TAIR10: catalytics;transferases;[acyl-carrier-protein] S-malonyltransferases;binding \| chr2:12883162-12885482 REVERSE LENGTH=393	SoyBase	E_val: 0	ISS
GO:0006744	GO-bp	Annotation by Michelle Graham. GO Biological Process: ubiquinone biosynthetic process	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004314	GO-mf	Annotation by Michelle Graham. GO Molecular Function: [acyl-carrier-protein] S-malonyltransferase activity	SoyBase	N/A	ISS
GO:0016740	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity	SoyBase	N/A	ISS
KOG2926	KOG	Malonyl-CoA:ACP transacylase	JGI		ISS
PTHR10982	Panther	MALONYL COENZYME A-ACYL CARRIER PROTEIN TRANSACYLASE-RELATED	JGI		ISS
PF00698	PFAM	Acyl transferase domain	JGI		ISS
UniRef100_I1LLS4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LLS4_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q2VA66	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Malonyltransferase n=1 Tax=Glycine max RepID=Q2VA66_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma11g29490

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g29490

Paralog	Evidence	Comments
Glyma18g06500	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g29490 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g164500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g29490

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma11g29490

Limit To All Plant Sequences

>Glyma11g29490.1   sequence type=CDS   gene model=Glyma11g29490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTTCCTCTCTCGTTCTTCCTTCCACTCCCTTCTTCGCCCATGGAACAAGAACCCTCCCTCTCACTCGATCTAGGCTTTCCATGACCGTCTCCGCCGGATCTCAGCCTTCTCTCCGCGACGCTCTGTTCGCCGATTACAAGGCCTCCACTTCATTCCTCTTCCCCGGCCAGGGTGCTCAAGCTGTTGGAATGGGGAAAGAAGCTCAGAATGTGCCTACTGCTGCGGTTTTGTTCAACAAGGCAAACGACGTATTGGGGTTTGATCTTCTTGATATATGCATCAATGGGCCAAAAGAAAAGCTAGATTCAACTGTTATCAGCCAGCCAGCTATTTATGTCACAAGTCTTGCTGCTGTAGAGCTACTTCGTGCGCGTGATGGAGGTCAGCAGATTATTGACTCAGTTGATGTTACATGTGGTTTAAGCCTGGGAGAATATACTGCTCTGGCATTTGCTGGGGCTTTTAGCTTTGAAGATGGACTCAAGTTGGTCAAACTGAGGGGTGAGGCCATGCAGGATGCCGCTGATGCTGCTAAAAGTGCTATGGTTAGTGTGATAGGACTGGACTCAGAGAAGGTCCAACAATTGTGTGATGCAGCCAATCAGGAAGTTCCTGAAGCTGAGAAGGTTCAGATTGCCAATTACCTGTGCCCAGGAAACTATGCTGTCTCCGGGGGATTAAAAGGAGTAGAAGTGCTGGAATCCAAGGCAAAGTCTTTCAAGGCTCGAATGACGGTGCGCCTAGCTGTTGCTGGTGCTTTCCACACTAGTTTTATGAAACCAGCTGTGTCAAGGTTGGAAGCAGCATTGGCAACAACAGAAATCAGAACCCCAAGAATACCAGTCATCTCCAATGTGAATGCACAGCCACATACAGATCCTGACTCAATAAAGAAGATATTGGCATGCCAGGTTACCTCACCTGTTCAATGGGAAACAACAGTGCAGACTCTTCTAACCAAGGGTCTGAAGAAAAGCTATGAACTCGGACCCGGAAAGGTTATTGCTGGAATCATCAAAAGAACGGACAAAGGTGCTGATATTGAAAATATTGGGGCTTAG

Predicted protein sequences of Glyma11g29490

Limit To All Plant Sequences

>Glyma11g29490.1   sequence type=predicted peptide   gene model=Glyma11g29490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSSLVLPSTPFFAHGTRTLPLTRSRLSMTVSAGSQPSLRDALFADYKASTSFLFPGQGAQAVGMGKEAQNVPTAAVLFNKANDVLGFDLLDICINGPKEKLDSTVISQPAIYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRGEAMQDAADAAKSAMVSVIGLDSEKVQQLCDAANQEVPEAEKVQIANYLCPGNYAVSGGLKGVEVLESKAKSFKARMTVRLAVAGAFHTSFMKPAVSRLEAALATTEIRTPRIPVISNVNAQPHTDPDSIKKILACQVTSPVQWETTVQTLLTKGLKKSYELGPGKVIAGIIKRTDKGADIENIGA*

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