Glyma11g29460 - SoyBase

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Report for Sequence Feature Glyma11g29460

Feature Type:	gene_model
Chromosome:	Gm11
Start:	30155460
stop:	30160850
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g29460

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G58490	AT	Annotation by Michelle Graham. TAIR10: NAD(P)-binding Rossmann-fold superfamily protein \| chr5:23643068-23644455 FORWARD LENGTH=324	SoyBase	E_val: 1.00E-161	ISS
GO:0009809	GO-bp	Annotation by Michelle Graham. GO Biological Process: lignin biosynthetic process	SoyBase	N/A	ISS
GO:0019761	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucosinolate biosynthetic process	SoyBase	N/A	ISS
GO:0044237	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular metabolic process	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0016621	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cinnamoyl-CoA reductase activity	SoyBase	N/A	ISS
GO:0050662	GO-mf	Annotation by Michelle Graham. GO Molecular Function: coenzyme binding	SoyBase	N/A	ISS
KOG1502	KOG	Flavonol reductase/cinnamoyl-CoA reductase	JGI		ISS
PTHR10366	Panther	NAD DEPENDENT EPIMERASE/DEHYDRATASE	JGI		ISS
PTHR10366:SF9	Panther	NAD(P)H STEROID DEHYDROGENASE-RELATED	JGI		ISS
PF01370	PFAM	NAD dependent epimerase/dehydratase family	JGI		ISS
UniRef100_B0LVF3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Dihydroflavonol reductase n=1 Tax=Glycine max RepID=B0LVF3_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_C6TL53	UniRef	Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6TL53_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma11g29460

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g29460

Paralog	Evidence	Comments
Glyma18g06510	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g29460 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g164700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g29460

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma11g29460

Limit To All Plant Sequences

>Glyma11g29460.2   sequence type=transcript   gene model=Glyma11g29460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCCGGTTCAAAAATATTAATTATCTCCAAATACATGGATTTCTCTGAAGTCTTTCCAATTTATTCCCTGCACGAGCTTCTTTATATAGTAGGATTGTGTCTTCCTTCATCACACTAAACAAGTTAAAAGAAGAGCATCACTGAACTAACAAAGCAACCCTATGTCGAAGGTGGTTTGTGTCACCGGAGCCAGCGGCGCCATCGGATCATGGGTGGTCCTACTCCTCCTCCAGCGTGGTTACACCGTCCATGCCACCGTCCAAGATATCAAGGATGAAAATGAGACGAAACATTTGGAGGAAATGGAAGGAGCAAAGAGTCATCTCCATTTTTTTGAAATGGATCTTCTTGACATCGACTCCATTGCCGCTGCCATAAAGGGTTGTTCCGGCGTAATCCACCTTGCATGTCCTAACATCATTGGTCAAGTCGAAGATCCCGAGAAACAGATATTGGAACCGGCGATAAAAGGAACGGTTAATGTGTTGAAGGCGGCGAAGGAAGCAGGGGTGGAGCGCGTGGTGGCGACTTCATCGATTTCGTCGATTATGCCAAGTCCTAATTGGCCAGCTGATAAGATTAAGGGAGAAGAGTGTTGGACGGACCTTGAATACTGCAAGCAAAAGGGGTTGTATTATCCCATTGCAAAGACTCTAGCAGAGAAAGCGGGTTGGGACTTTGCGAAGGAGACAGGTTTTGATGTTGTCATGATAAACCCTGGTACAGCATTGGGCCCTCTGCTTCCTCCAAGAATCAATTCAAGCATGGCTGTGCTTGTTAGTGTTCTCAAAGGGGGCAAAGAGACCTACGAGGACTTCTTTATGGGAACGGCTCACTTCAAAGACATAGCATTGGCACATATTTTGGCACTTGAGAACAAGAAAGCAGCAGGAAGGCACTTGTGTGTGGAATCTATTCGTCACTTTAGTGATCTTGTGGACAAGGTTGCTGAGTTATACCCTGAATACGATGTGGCTAAGTGAGTATTCTCCATAATCTCATATCACAACTAGTACTTTTTCTGATAAACTAATATGTAATTTGAAAAAAAAAAGAAGATTATTTGAATTTACATACTTATGCAATTACATAATTTCAAATTGAACAAATACCAATACATAAATAAATTTATGAGCAAACTCTAAGGAATTGGTTGAGTGGAGCAACACAACCACAAAGTCTCCCATCTGACAGGTTTGAGGTTTGAATCCACATTGTCTTCTTGGGGTGAGATAAATGTAAATATCTATATAAGTGTTCTTTTAGCTCCAATGTTTTTCCTGCCTTAGGTTGAGACATCATTTCCTCCTCCTAAATTTTAATTCTCCAAAAAAAAAAAAAAATTGCTGAGAAGTACACTTCTAAGATCAATTACATTTGGAGCAAAAGAATCTAAATGGGTACTGATAGTTTATGCCGAGTACTAATAATTTAGTAAAAGAAACTCTGCGTTGGCAATGGAAAAGATTTTACACTTATCCAATAAAAAAGTGTCCTTTATGATAAATTTATTAATTTTTACAATAATTATATTAAGAGTTATACTAATAACAATTTCAGATTAATGGACAGTTGCATAAAATTTTGCTACATAGCCGCTGTGCATAGTTGCATAGAGATTAAATTCTTAATAATTTTAATTTCTTTGGTTATAGGTTGCCAAAGGATACCCAACCAGGGTTGTTGAGAGCAAGTGGAAAGGATGCATCAAAGAAGCTGATTGATTTAGGTCTAGAATTCACTCCTGTTGAGCAAATCATCAAGGATGCAGTGGAGAGTTTGAAGAGCAGGGGCTATGTCTAATTTCTCTGCTACTGCAGAGGAACTGAGTGCACTGTTACAAGTGGTGGTGGCGTTAATATTATTGTTCTGCCATTGCTTTGACTCATTGTTCATGCCATTTATGTTTTTACCTATGGTCTTGTGTTGTGCACTTGTGCGTGTAACTGTATTCTAAAATAAGGGTCACTTGGATCAGTGGTTGTAACGATATCAATGTTTTGCGAGAGTTTTAATTTACTCTTGCAGTTATTAGTGAAAGATTGAGCGGTCTCATCTTCATTGCTCAGTTTAATCATCAAAAGCATCTCCTTCAATACCATTTGTTAATGCTTGCACATATAGTTTCCGCTAATAAAAACTCTGGTGAACTTTTATAAATTAACATTTTTCTGGTTT

>Glyma11g29460.3   sequence type=transcript   gene model=Glyma11g29460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCCGGTTCAAAAATATTAATTATCTCCAAATACATGGATTTCTCTGAAGTCTTTCCAATTTATTCCCTGCACGAGCTTCTTTATATAGTAGGATTGTGTCTTCCTTCATCACACTAAACAAGTTAAAAGAAGAGCATCACTGAACTAACAAAGCAACCCTATGTCGAAGGTGGTTTGTGTCACCGGAGCCAGCGGCGCCATCGGATCATGGGTGGTCCTACTCCTCCTCCAGCGTGGTTACACCGTCCATGCCACCGTCCAAGATATCAAGGATGAAAATGAGACGAAACATTTGGAGGAAATGGAAGGAGCAAAGAGTCATCTCCATTTTTTTGAAATGGATCTTCTTGACATCGACTCCATTGCCGCTGCCATAAAGGGTTGTTCCGGCGTAATCCACCTTGCATGTCCTAACATCATTGGTCAAGTCGAAGATCCCGAGTTGTATTATCCCATTGCAAAGACTCTAGCAGAGAAAGCGGGTTGGGACTTTGCGAAGGAGACAGGTTTTGATGTTGTCATGATAAACCCTGGTACAGCATTGGGCCCTCTGCTTCCTCCAAGAATCAATTCAAGCATGGCTGTGCTTGTTAGTGTTCTCAAAGGGGGCAAAGAGACCTACGAGGACTTCTTTATGGGAACGGCTCACTTCAAAGACATAGCATTGGCACATATTTTGGCACTTGAGAACAAGAAAGCAGCAGGAAGGCACTTGTGTGTGGAATCTATTCGTCACTTTAGTGATCTTGTGGACAAGGTTGCTGAGTTATACCCTGAATACGATGTGGCTAAGTTGCCAAAGGATACCCAACCAGGGTTGTTGAGAGCAAGTGGAAAGGATGCATCAAAGAAGCTGATTGATTTAGGTCTAGAATTCACTCCTGTTGAGCAAATCATCAAGGATGCAGTGGAGAGTTTGAAGAGCAGGGGCTATGTCTAATTTCTCTGCTACTGCAGAGGAACTGAGTGCACTGTTACAAGTGGTGGTGGCGTTAATATTATTGTTCTGCCATTGCTTTGACTCATTGTTCATGCCATTTATGTTTTTACCTATGGTCTTGTGTTGTGCACTTGTGCGTGTAACTGTATTCTAAAATAAGGGTCACTTGGATCAGTGGTTGTAACGATATCAATGTTTTGCGAGAGTTTTAATTTACTCTTGCAGTTATTAGTGAAAGATTGAGCGGTCTCATCTTCATTGCTCAGTTTAATCATCAAAAGCATCTCCTTCAATACCATTTGTTAATGCTTGCACATATAGTTTCCGCTAATAAAAACTCTGGTGAACTTTTATAAATTAACATTTTTCTGGTTT

Coding sequences of Glyma11g29460

Limit To All Plant Sequences

>Glyma11g29460.1   sequence type=CDS   gene model=Glyma11g29460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGAAGGTGGTTTGTGTCACCGGAGCCAGCGGCGCCATCGGATCATGGGTGGTCCTACTCCTCCTCCAGCGTGGTTACACCGTCCATGCCACCGTCCAAGATATCAAGGATGAAAATGAGACGAAACATTTGGAGGAAATGGAAGGAGCAAAGAGTCATCTCCATTTTTTTGAAATGGATCTTCTTGACATCGACTCCATTGCCGCTGCCATAAAGGGTTGTTCCGGCGTAATCCACCTTGCATGTCCTAACATCATTGGTCAAGTCGAAGATCCCGAGAAACAGATATTGGAACCGGCGATAAAAGGAACGGTTAATGTGTTGAAGGCGGCGAAGGAAGCAGGGGTGGAGCGCGTGGTGGCGACTTCATCGATTTCGTCGATTATGCCAAGTCCTAATTGGCCAGCTGATAAGATTAAGGGAGAAGAGTGTTGGACGGACCTTGAATACTGCAAGCAAAAGGGGTTGTATTATCCCATTGCAAAGACTCTAGCAGAGAAAGCGGGTTGGGACTTTGCGAAGGAGACAGGTTTTGATGTTGTCATGATAAACCCTGGTACAGCATTGGGCCCTCTGCTTCCTCCAAGAATCAATTCAAGCATGGCTGTGCTTGTTAGTGTTCTCAAAGGGGGCAAAGAGACCTACGAGGACTTCTTTATGGGAACGGCTCACTTCAAAGACATAGCATTGGCACATATTTTGGCACTTGAGAACAAGAAAGCAGCAGGAAGGCACTTGTGTGTGGAATCTATTCGTCACTTTAGTGATCTTGTGGACAAGGTTGCTGAGTTATACCCTGAATACGATGTGGCTAAGTTGCCAAAGGATACCCAACCAGGGTTGTTGAGAGCAAGTGGAAAGGATGCATCAAAGAAGCTGATTGATTTAGGTCTAGAATTCACTCCTGTTGAGCAAATCATCAAGGATGCAGTGGAGAGTTTGAAGAGCAGGGGCTATGTCTAA

>Glyma11g29460.2   sequence type=CDS   gene model=Glyma11g29460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGAAGGTGGTTTGTGTCACCGGAGCCAGCGGCGCCATCGGATCATGGGTGGTCCTACTCCTCCTCCAGCGTGGTTACACCGTCCATGCCACCGTCCAAGATATCAAGGATGAAAATGAGACGAAACATTTGGAGGAAATGGAAGGAGCAAAGAGTCATCTCCATTTTTTTGAAATGGATCTTCTTGACATCGACTCCATTGCCGCTGCCATAAAGGGTTGTTCCGGCGTAATCCACCTTGCATGTCCTAACATCATTGGTCAAGTCGAAGATCCCGAGAAACAGATATTGGAACCGGCGATAAAAGGAACGGTTAATGTGTTGAAGGCGGCGAAGGAAGCAGGGGTGGAGCGCGTGGTGGCGACTTCATCGATTTCGTCGATTATGCCAAGTCCTAATTGGCCAGCTGATAAGATTAAGGGAGAAGAGTGTTGGACGGACCTTGAATACTGCAAGCAAAAGGGGTTGTATTATCCCATTGCAAAGACTCTAGCAGAGAAAGCGGGTTGGGACTTTGCGAAGGAGACAGGTTTTGATGTTGTCATGATAAACCCTGGTACAGCATTGGGCCCTCTGCTTCCTCCAAGAATCAATTCAAGCATGGCTGTGCTTGTTAGTGTTCTCAAAGGGGGCAAAGAGACCTACGAGGACTTCTTTATGGGAACGGCTCACTTCAAAGACATAGCATTGGCACATATTTTGGCACTTGAGAACAAGAAAGCAGCAGGAAGGCACTTGTGTGTGGAATCTATTCGTCACTTTAGTGATCTTGTGGACAAGGTTGCTGAGTTATACCCTGAATACGATGTGGCTAAGTGA

>Glyma11g29460.3   sequence type=CDS   gene model=Glyma11g29460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGAAGGTGGTTTGTGTCACCGGAGCCAGCGGCGCCATCGGATCATGGGTGGTCCTACTCCTCCTCCAGCGTGGTTACACCGTCCATGCCACCGTCCAAGATATCAAGGATGAAAATGAGACGAAACATTTGGAGGAAATGGAAGGAGCAAAGAGTCATCTCCATTTTTTTGAAATGGATCTTCTTGACATCGACTCCATTGCCGCTGCCATAAAGGGTTGTTCCGGCGTAATCCACCTTGCATGTCCTAACATCATTGGTCAAGTCGAAGATCCCGAGTTGTATTATCCCATTGCAAAGACTCTAGCAGAGAAAGCGGGTTGGGACTTTGCGAAGGAGACAGGTTTTGATGTTGTCATGATAAACCCTGGTACAGCATTGGGCCCTCTGCTTCCTCCAAGAATCAATTCAAGCATGGCTGTGCTTGTTAGTGTTCTCAAAGGGGGCAAAGAGACCTACGAGGACTTCTTTATGGGAACGGCTCACTTCAAAGACATAGCATTGGCACATATTTTGGCACTTGAGAACAAGAAAGCAGCAGGAAGGCACTTGTGTGTGGAATCTATTCGTCACTTTAGTGATCTTGTGGACAAGGTTGCTGAGTTATACCCTGAATACGATGTGGCTAAGTTGCCAAAGGATACCCAACCAGGGTTGTTGAGAGCAAGTGGAAAGGATGCATCAAAGAAGCTGATTGATTTAGGTCTAGAATTCACTCCTGTTGAGCAAATCATCAAGGATGCAGTGGAGAGTTTGAAGAGCAGGGGCTATGTCTAA

Predicted protein sequences of Glyma11g29460

Limit To All Plant Sequences

>Glyma11g29460.1   sequence type=predicted peptide   gene model=Glyma11g29460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSKVVCVTGASGAIGSWVVLLLLQRGYTVHATVQDIKDENETKHLEEMEGAKSHLHFFEMDLLDIDSIAAAIKGCSGVIHLACPNIIGQVEDPEKQILEPAIKGTVNVLKAAKEAGVERVVATSSISSIMPSPNWPADKIKGEECWTDLEYCKQKGLYYPIAKTLAEKAGWDFAKETGFDVVMINPGTALGPLLPPRINSSMAVLVSVLKGGKETYEDFFMGTAHFKDIALAHILALENKKAAGRHLCVESIRHFSDLVDKVAELYPEYDVAKLPKDTQPGLLRASGKDASKKLIDLGLEFTPVEQIIKDAVESLKSRGYV*

>Glyma11g29460.2   sequence type=predicted peptide   gene model=Glyma11g29460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSKVVCVTGASGAIGSWVVLLLLQRGYTVHATVQDIKDENETKHLEEMEGAKSHLHFFEMDLLDIDSIAAAIKGCSGVIHLACPNIIGQVEDPEKQILEPAIKGTVNVLKAAKEAGVERVVATSSISSIMPSPNWPADKIKGEECWTDLEYCKQKGLYYPIAKTLAEKAGWDFAKETGFDVVMINPGTALGPLLPPRINSSMAVLVSVLKGGKETYEDFFMGTAHFKDIALAHILALENKKAAGRHLCVESIRHFSDLVDKVAELYPEYDVAK*

>Glyma11g29460.3   sequence type=predicted peptide   gene model=Glyma11g29460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSKVVCVTGASGAIGSWVVLLLLQRGYTVHATVQDIKDENETKHLEEMEGAKSHLHFFEMDLLDIDSIAAAIKGCSGVIHLACPNIIGQVEDPELYYPIAKTLAEKAGWDFAKETGFDVVMINPGTALGPLLPPRINSSMAVLVSVLKGGKETYEDFFMGTAHFKDIALAHILALENKKAAGRHLCVESIRHFSDLVDKVAELYPEYDVAKLPKDTQPGLLRASGKDASKKLIDLGLEFTPVEQIIKDAVESLKSRGYV*

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