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Report for Sequence Feature Glyma11g29430

Feature Type:gene_model
Chromosome:Gm11
Start:30087895
stop:30090420
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma11g29430
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G58470AT Annotation by Michelle Graham. TAIR10: TBP-associated factor 15B | chr5:23638566-23640854 REVERSE LENGTH=422 SoyBaseE_val: 2.00E-71ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0003676GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
PTHR23238Panther RNA BINDING PROTEIN JGI ISS
PTHR23238:SF17Panther JGI ISS
PF00076PFAM RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) JGI ISS
UniRef100_G7J0R5UniRef Annotation by Michelle Graham. Most informative UniRef hit: HIV Tat-specific factor-like protein n=1 Tax=Medicago truncatula RepID=G7J0R5_MEDTR SoyBaseE_val: 5.00E-119ISS
UniRef100_I1LLR8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LLR8_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma11g29430
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g29430
ParalogEvidenceComments
Glyma18g06560 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g29430 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.11g165000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma11g29430
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma11g29430
>Glyma11g29430.1   sequence type=CDS   gene model=Glyma11g29430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTGGAGCGTACGGTCAAGACGGCGGCGGTTCCGCGCCACCGTCCTATGGATCCAGCGGCGGATACAGTTCCGTCGGTGGTTACGGTGCTACTGGTGGTGGTGGTGCCGGCGGGGGTGGCAGTTATGGTGGCGGAGGCTATGGAGGAGGAGGAGGCGGTGCCGGATACGGTGGTAGTGATGGCGGTGGAGGTTATGGAACCAAAGGCAGCGGAAACGGCGGTGGATATGGCGGTAACGATAGTGGAGGTTATGGCGGAAGAGGCGGCTACGGTGGAAACGACGGCGGAGGCTATGGAGGAAGAGGCGGCGGTGGAGGCGCTGGTCAAGGTGGCCGGGGAGGTGGTGGATATGGTGGTCGAGGAGGTGGTGGAGGTGGTGGATTTCAAGGCGGAGATCGTGGTGGTCGAGGTGGTGGTCGCGGCGGCGGTCGTGGTGGAGGCAGAGATGGAGACTGGCGTTGTCCTAACCAAAGCCAAATCAGTGAGAATTTTGCTGCTTTGATTTCTGGTGAATGCAACAAATGCGGTGCTCCAAGTCCTAATCCCAATAGTTCTAATGATCGTGGTGGCAGTGGCAGTGGCGGTGGTTATAATAGAGGAGGTGGAGGCTATGGTAACAATCGAGGAGGAAGAGGTAATGACTATAGCAGCGGAGGGGGTAGATCTGGTAGTTATGATGGAGGGAGAGGCAATGAATATAATAGTGGAAGGGGTGGTAATAGTGAAGGTAGAGGTGGTTCATATAGAGGTAGTCAGGGGAGAGAAGATGGTGGTTATGGTCAAGTTCCTGCTCCTACTGCCCAATCTTACGGTGGTGTTGGTGGAAACTACCCATCCACTTACAGTTCTTATAGTGGTGGGAATGCAAGTTATGGAACAGAAGCAGTTCCTCCACCTGCAAGTTATACTGGTGGACCTAATTCCTATCCTCCATCATATGGGGGTAGCGTGGGTGGTTATGGGGGAGATAATCAAGGGGATGGACGGAGTGGTGGTAGATCTGGGCCTCCTGCTGGATATGACAGTAGTTACGGTGCTGGTAATCGAGGTGGATTTGGTGGATCTTCTGCAGAGACCCCTGCTACAGTGAAGCAGTGTGATGAGAATTGTGACGATACATGTGACAACTCTAGAATCTACATCTCAAACCTACCACCAGATGTGACTACTGAAGAATTGAGGGAACTTTTTGGAGGCATTGGACAAGTTGGAAGAATAAAGCAGAAGAGGGGCTATAAAGATCAGTGGCCTTGGAACATAAAGATTTACACTGATGAGAGTGGAAACAACAAGGGTGATGCATGCCTTGCTTATGAAGACCCTTCTGCAGCACATTCTGCTGGCGGTTTTTACAATAATTATGATTTGAGGGGTTACAAAATCAGTGTTGCAATGGCAGAAAAATCTGCACCAAGAGCTCCACCTGCATATAACCAAGGGGGCAATAGGGGTGGCTATGGTGGAGATAGACGCAGAGACAATTATAGAGATGGAGGTGGTTCTGGGCCTGATAGGCGTGATCATTATGGAAATCGTTCTCGTCCATACTGA
Predicted protein sequences of Glyma11g29430
>Glyma11g29430.1   sequence type=predicted peptide   gene model=Glyma11g29430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGAYGQDGGGSAPPSYGSSGGYSSVGGYGATGGGGAGGGGSYGGGGYGGGGGGAGYGGSDGGGGYGTKGSGNGGGYGGNDSGGYGGRGGYGGNDGGGYGGRGGGGGAGQGGRGGGGYGGRGGGGGGGFQGGDRGGRGGGRGGGRGGGRDGDWRCPNQSQISENFAALISGECNKCGAPSPNPNSSNDRGGSGSGGGYNRGGGGYGNNRGGRGNDYSSGGGRSGSYDGGRGNEYNSGRGGNSEGRGGSYRGSQGREDGGYGQVPAPTAQSYGGVGGNYPSTYSSYSGGNASYGTEAVPPPASYTGGPNSYPPSYGGSVGGYGGDNQGDGRSGGRSGPPAGYDSSYGAGNRGGFGGSSAETPATVKQCDENCDDTCDNSRIYISNLPPDVTTEELRELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDESGNNKGDACLAYEDPSAAHSAGGFYNNYDLRGYKISVAMAEKSAPRAPPAYNQGGNRGGYGGDRRRDNYRDGGGSGPDRRDHYGNRSRPY*






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