SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G15080 | AT | Annotation by Michelle Graham. TAIR10: lipid phosphate phosphatase 2 | chr1:5188080-5189476 FORWARD LENGTH=290 | SoyBase | E_val: 7.00E-87 | ISS |
| GO:0009738 | GO-bp | Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0005887 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to plasma membrane | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0003993 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: acid phosphatase activity | SoyBase | N/A | ISS |
| GO:0008195 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phosphatidate phosphatase activity | SoyBase | N/A | ISS |
| KOG3030 | KOG | Lipid phosphate phosphatase and related enzymes of the PAP2 family | JGI | ISS | |
| PTHR10165 | Panther | LIPID PHOSPHATE PHOSPHATASE-RELATED | JGI | ISS | |
| PTHR10165:SF45 | Panther | PHOSPHATIDATE PHOSPHATASE | JGI | ISS | |
| PF01569 | PFAM | PAP2 superfamily | JGI | ISS | |
| UniRef100_G7J0R9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Lipid phosphate phosphatase n=1 Tax=Medicago truncatula RepID=G7J0R9_MEDTR | SoyBase | E_val: 1.00E-123 | ISS |
| UniRef100_UPI000233C516 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233C516 related cluster n=1 Tax=unknown RepID=UPI000233C516 | SoyBase | E_val: 7.00E-165 | ISS |
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Glyma11g29391 not represented in the dataset |
Glyma11g29391 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma18g06576 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g165300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g29391.1 sequence type=CDS gene model=Glyma11g29391 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATTTTCAATGTCCAGGAAGCAAGTTGGCACTAAGTCATATGTATGATTGGTTGATTCTTCTACTTCTTGCTGCTATAGAAGAAGCCTTGAATATGATAGAACCATTCCATTGCTACATCCTCTCTGTTTTCATCCCCATGTTTATCTTTGTTGCATTTTACCTTGCCAGAAGGGATGTCTATGATTTACACCTTGCAACATTAGGTCTCATGTTTTCAAGTTTAATCATTGGAGTCATAACAGATTCCATTAAAGATGTTGTCGGTAGACCGCGACCAAACTTCTTCCAACGGTGTTTCCTTGACAATATACCTATTGACAATAAGATTTTTTTTTACTTTCAACATATCCTAAACATTGTTCATTTTGTGTTTCATAAAGGCAATGGTGATGTTGTTTGTACCGAGATTAAAGCAGTTATAAAGGAAGGATACAAAAGCTTTCCAAGTGAGCACACTTCATGGTCCTTTGCTGGCCTTGGTTTCCTTTCATGGTACTTATCAAGGAAAGTTAGAGTGTTTGATCGTAGGGGCAATATTGGGAAACTATGCCTAGTCTTGCTTCCTTTACTTATTGCTGCTCTTGTGGGAATTACTCGAGTTGATGATTACTGGCGTCATTGGACTGATGTGTTTGTTGGAGGCCTTATAGGACTTACCGTGTCCTCAATCTGCTATTTGCTACTCTTTTCCTTGCCTACCCTTCCACATGGTTGGGCTCCTCATGTTTTATTTCATATGATGGGAGAGAGTGATTCTCCTTCCCAGCGAGGAAGCCAAACTCCACATGCAACAACACTAGATGAGTTTACCTTGCAAATGACGGAAATGGAAAGTGGTACAAGATATGTGAATGTGTGA
>Glyma11g29391.1 sequence type=predicted peptide gene model=Glyma11g29391 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDFQCPGSKLALSHMYDWLILLLLAAIEEALNMIEPFHCYILSVFIPMFIFVAFYLARRDVYDLHLATLGLMFSSLIIGVITDSIKDVVGRPRPNFFQRCFLDNIPIDNKIFFYFQHILNIVHFVFHKGNGDVVCTEIKAVIKEGYKSFPSEHTSWSFAGLGFLSWYLSRKVRVFDRRGNIGKLCLVLLPLLIAALVGITRVDDYWRHWTDVFVGGLIGLTVSSICYLLLFSLPTLPHGWAPHVLFHMMGESDSPSQRGSQTPHATTLDEFTLQMTEMESGTRYVNV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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