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Report for Sequence Feature Glyma11g29350

Feature Type:gene_model
Chromosome:Gm11
Start:30027341
stop:30030616
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma11g29350
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G07080AT Annotation by Michelle Graham. TAIR10: Thioredoxin superfamily protein | chr1:2170069-2171861 FORWARD LENGTH=265 SoyBaseE_val: 1.00E-88ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
KOG3160 KOG Gamma-interferon inducible lysosomal thiol reductase JGI ISS
PTHR13234Panther GAMMA-INTERFERON INDUCIBLE LYSOSOMAL THIOL REDUCTASE (GILT)-RELATED JGI ISS
PTHR13234:SF6Panther LYSOSOMAL THIOL REDUCTASE-RELATED JGI ISS
PF03227PFAM Gamma interferon inducible lysosomal thiol reductase (GILT) JGI ISS
UniRef100_G7J0S1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Gamma-interferon-inducible lysosomal thiol reductase n=1 Tax=Medicago truncatula RepID=G7J0S1_MEDTR SoyBaseE_val: 2.00E-131ISS
UniRef100_I1LLR5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LLR5_SOYBN SoyBaseE_val: 3.00E-178ISS

Expression Patterns of Glyma11g29350
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma11g29350 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.11g165600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma11g29350
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma11g29350
>Glyma11g29350.1   sequence type=CDS   gene model=Glyma11g29350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTATCTGTTTCTCTGCTCTTATTCCTATCTTTCTTTGCCTTCTTTGCACCCTCTGAATCTCACGACAAAGTCTCGTTGGAATTGTACTACGAAAGCTTATGCCCCTACAGCGCCAACTTCATCGTGAATCACCTCCCAAAAATCTTCACCCCAGATCTTGCCCCAATCGTTCACCTCAAACTCGTTCCTTGGGGCAATGCCAAACTCCGTGCCAACGCCACCTTTGACTGCCAGCATGGGCCATATGAGTGCTTGCTGAACACAGTTGAAGCCTGTGCAATTCACATCTGGCCTCAACTCAGCAAACATTTTCCTTTCATCTACTGTGTTGAGGATCTGGTGTTTCAGAGTAAGCGTGAGGAATGGGAATCTTGTTTTGAGAAACTGGATCTTGATTCGGAACCTATTAATCAGTGTTATAATAGTGAACATGGAAAACAGTTGGAGCTACAATATGCAGCTGAAACAAGTGCTCTGGAGCCTCCTCACAAGTATGTTCCTTGGGTAGTTGTGGATGGAGAACCACTCTATGAGGATTATGAGAACTTCTTAAGCTATCTTTGTAAGGCTTATAAAGGCACTGTTACACCCCAAAGTTGCACCCAAGCATCATACCTAAGAGAAGTGAATGCAAAGCCTAAGCATTCGGTTTGCTACAAGGACAGTGGGATTATGCTAACATGGGAAAAAGTGAGGTCAACCATTGCATCATGGATGCACTAG
Predicted protein sequences of Glyma11g29350
>Glyma11g29350.1   sequence type=predicted peptide   gene model=Glyma11g29350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVSVSLLLFLSFFAFFAPSESHDKVSLELYYESLCPYSANFIVNHLPKIFTPDLAPIVHLKLVPWGNAKLRANATFDCQHGPYECLLNTVEACAIHIWPQLSKHFPFIYCVEDLVFQSKREEWESCFEKLDLDSEPINQCYNSEHGKQLELQYAAETSALEPPHKYVPWVVVDGEPLYEDYENFLSYLCKAYKGTVTPQSCTQASYLREVNAKPKHSVCYKDSGIMLTWEKVRSTIASWMH*






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