SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G30110 | AT | Annotation by Michelle Graham. TAIR10: ubiquitin-activating enzyme 1 | chr2:12852632-12857369 REVERSE LENGTH=1080 | SoyBase | E_val: 0 | ISS |
| GO:0006464 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular protein modification process | SoyBase | N/A | ISS |
| GO:0006486 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein glycosylation | SoyBase | N/A | ISS |
| GO:0006487 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein N-linked glycosylation | SoyBase | N/A | ISS |
| GO:0006511 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process | SoyBase | N/A | ISS |
| GO:0006635 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation | SoyBase | N/A | ISS |
| GO:0006888 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ER to Golgi vesicle-mediated transport | SoyBase | N/A | ISS |
| GO:0009407 | GO-bp | Annotation by Michelle Graham. GO Biological Process: toxin catabolic process | SoyBase | N/A | ISS |
| GO:0016567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein ubiquitination | SoyBase | N/A | ISS |
| GO:0043090 | GO-bp | Annotation by Michelle Graham. GO Biological Process: amino acid import | SoyBase | N/A | ISS |
| GO:0043161 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteasomal ubiquitin-dependent protein catabolic process | SoyBase | N/A | ISS |
| GO:0046686 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cadmium ion | SoyBase | N/A | ISS |
| GO:0051707 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to other organism | SoyBase | N/A | ISS |
| GO:0051788 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to misfolded protein | SoyBase | N/A | ISS |
| GO:0080129 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteasome core complex assembly | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0004839 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ubiquitin activating enzyme activity | SoyBase | N/A | ISS |
| GO:0004842 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0008641 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: small protein activating enzyme activity | SoyBase | N/A | ISS |
| KOG2012 | KOG | Ubiquitin activating enzyme UBA1 | JGI | ISS | |
| PTHR10953 | Panther | UBIQUITIN-ACTIVATING ENZYME E1 | JGI | ISS | |
| PTHR10953:SF4 | Panther | MOP-4 | JGI | ISS | |
| PF00899 | PFAM | ThiF family | JGI | ISS | |
| PF02134 | PFAM | Repeat in ubiquitin-activating (UBA) protein | JGI | ISS | |
| PF09358 | PFAM | Ubiquitin-activating enzyme e1 C-terminal domain | JGI | ISS | |
| PF10585 | PFAM | Ubiquitin-activating enzyme active site | JGI | ISS | |
| UniRef100_G7KEA9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ubiquitin-activating enzyme E1 n=1 Tax=Medicago truncatula RepID=G7KEA9_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MZW3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MZW3_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma11g29302 not represented in the dataset |
Glyma11g29302 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma18g06620 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g166100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g29302.1 sequence type=CDS gene model=Glyma11g29302 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTTCCAACTAAGAGACCTTGCGAAGGACTGGTTGCAGAAGAAGAGATCGACCACAACATCAACAACAACAACAACAGCAACAGCAGTTCTCTCAAGAAGAAACGGATTGCCGCCGGAACCGCCGATTCGACGGTGAAGAACGACGAAAGCACCGTCCGGAGCTTCAACAACAGCAACAGCAACAACAGCAGCAACAGCGGGGACGCGAGTGAAGGAGCGTCGGATATGGCTTTGGGCGAATCGAACCCGCCGGACATCGATGAGGATCTCCACAGCCGACAACTCGCCGTGTATGGGCGAGAGACCATGCGGAGGCTCTTCGGTTCCAACGTTCTCGTCTCCGGGATGCAGGGTGTTGGCGTCGAGATTGCGAAGAATCTCATTCTTGCTGGTGTCAAGTCCGTGACCTTGCATGATGAGGGGACTGTGGAGCTGTGGGATCTATCCAGTAACTTTGTGTTTTCAGAGAATGATGTTGGTAAAAACAGGGCAGCAGCTTCTGTTAGTAAGCTGCAGGAGCTCAACAATGCAGTGGTTGTACAAAGCTTGACTACTCAGCTGACTAAAGAGCACCTTTCCAATTTCCAAGCTGTTGTTTTTACTGATATCAGTCTTGAGAAAGCCTGTGAGTTCAATGATTACTGCCACAGTCATCAGCCTCATATTGCCTTTATTAAAACTGAAGTTAGAGGCCTTTTTGGTTCTGTGTTCTGTGATTTTGGGCCTGAGTTTACTGTTGTTGATGTGGATGGTGAAGAACCCCGTACTGGCATTATTGCATCCATAAACAATGACAACCCTGCTCTAGTATCCTGTGTTGATGATGAGAGGCTTGAGTTTCAGGATGGAGATCTTGTTGTATTCTCTGAAATTCATGGTATGAAAGAATTGAATGATGGAAAGCCAAGAAAGATAAAAAATGCTAGAGCATATTCTTTTACTCTTGAAGAAGACACCACAAATTATGGTATGTATGAGAAAGGTGGTATTGTCACGCAGGTCAAACAACCTAAGGTATTGAACTTTAAGCCACTCAGGGAAGCACTCAGTGATCCTGGCGATTTTCTTCTGAGTGATTTTTCGAAGTTTGATCGCCCACCTCTCCTTCACTTAGCTTTCCAGGCTTTGGATAAATTCATTTTTGAGTTAGGTCGCTTCCCTTTTGCTGGTTCAGAGGATGATGCACTGAAGTTTATATCTTTTGCTAGTTATATTAATGACAGCTTAGGGGATGGGAAATTAGAAGACATAAATCCAAAACTTTTGCGATACTTTGCCTTTGGTTCTAGGGCTGTATTGAATCCTATGGCTGCCGTGTTTGGTGGAATAGTTGGACAAGAGGTTGTCAAAGCATGCTCCGGGAAGTTTCATCCACTTTTTCAGTTCTTCTACTTCGACTCTGTGGAATCACTGCCTTCAGAACCATTGGACCCAAATGATTTCAGACCAGTAAATGGTCGTTATGATGCACAGATTTCAGTATTTGGACACAAATTGCAGAAGAAATTAGAGGATTCTAAAGTGTTTGTTGTTGGATCTGGTGCTTTGGGATGCGAATTTTTAAAAAATCTTGCTCTCATGGGAGTTTCTTGTGGAAGTCAGGGGAAGCTCACTATTACTGATGATGATGTGATAGAGAAGAGTAACTTAAGCAGACAGTTCCTTTTCCGTGATTGGAATATTGGACAGGCCAAGTCCACAGTTGCTGCTTCAGCTGCTGCAGCTATAAATCCTAGTTTTAATATTGAAGCTCTACAAAATCGGGTTGGTTCTGAAACTGAGAATGTGTTTAATGATACCTTCTGGGAAAACTTGAGTGTCGTTGTAAATGCACTGGACAACGTTAATGCAAGACTATATGTTGATCAGAGATGCTTGTATTTCCAAAAGCCTCTTCTTGAGTCTGGAACTCTGGGAGCCAAATGCAATACGCAGATGGTAATTCCCCACCTGACAGAAAACTATGGTGCATCAAGAGATCCACCTGAGAAACAGGCACCAATGTGCACTGTACACTCATTTCCACACAATATTGACCATTGCTTGACATGGGCGCGATCTGAGTTTGAGGGTTTGCTTGAGAAAACTCCAGCCGAAGTAAATGCATATTTGTCTAACCCAAGTGAATATACTAATGCAATGAAAAATGCTGGTGATGCTCAAGCAAGGGATAACTTGGAGCGTGTTCTTGAGTGCCTAGACCGGGAGAAGTGTGAAACTTTTGAAGATTGTATCACTTGGGCTCGGCTAAAGTTTGAGGATTATTTTGTTAACCGGGTGAAGCAGTTGATCTATACTTTTCCTGAAGATGCTGCAACTAGTACTGGAGCTCTGTTCTGGTCTGCACCAAAAAGATTCCCTCGTCCACTACAGTTCTCAGCGACTGATTTGGGTCATCTATATTTTGTGTTGTCAGCTTCTATTTTACGGGCAGAAACATTTGGTATCCCAATCCCTGACTGGGGTAAGAACCCTAGGAAGATGGCTGAAGCTGTTGATAGGGTGATAGTACCTGACTTTCAGCCTAAGAAAGATGTGAAAATAGTGACAGATGAGAAGGCCACCAGTCTCTCTACAGCTTCTATAGATGATGCAGCGGTTATTAATGATCTAGTAATCAAGTTAGAGAGGTGCCGGGCAAATCTTTCACCAGTGTTCAGGATGAAACCAATCCAATTTGAGAAGGATGATGACACAAACTACCATATGGATGTGATTGCTGGGCTTGCCAACATGAGGGCACGGAATTACAGCATTCCTGAGGTTGACAAGCTTAAAGCCAAGTTTATTGCTGGCCGGATCATTCCTGCAATTGCAACCTCGACTGCCATGGCAACTGGTCTTGTCTGCCTGGAACTCTACAAAGCTTTGGATGGAGGACACAAAGTCGAAGACTACAGAAACACATTTGCTAACTTGGCACTACCTCTGTTTTCAATGGCTGAACCAGTTCCACCGAAAATTATCAAGCATCAAGATATGAGTTGGACAGTTTGGGATAGATGGATTCTCGGAAACAATCCTACCCTCAGGGAACTTCTCGAGTGGCTGAAAGCAAAGGGCTTGAATGCTTATAGCATCTCTTGTGGAAGTTGCCTACTCTATAATAGCATGTTCCCTAGGCATAAGGATCGAATGGACAAAAAGGTTGCAGATCTGGCAAGGGATGTAGCCAAGTTGGAAATTCCTTCCTACCGTCGCCATTTGGATGTTGTTGTGGCATGCGAGGATGACGAGGATAATGACATCGACATCCCTCAGATATCCGTTTATTTCCGTTAG
>Glyma11g29302.1 sequence type=predicted peptide gene model=Glyma11g29302 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLPTKRPCEGLVAEEEIDHNINNNNNSNSSSLKKKRIAAGTADSTVKNDESTVRSFNNSNSNNSSNSGDASEGASDMALGESNPPDIDEDLHSRQLAVYGRETMRRLFGSNVLVSGMQGVGVEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSENDVGKNRAAASVSKLQELNNAVVVQSLTTQLTKEHLSNFQAVVFTDISLEKACEFNDYCHSHQPHIAFIKTEVRGLFGSVFCDFGPEFTVVDVDGEEPRTGIIASINNDNPALVSCVDDERLEFQDGDLVVFSEIHGMKELNDGKPRKIKNARAYSFTLEEDTTNYGMYEKGGIVTQVKQPKVLNFKPLREALSDPGDFLLSDFSKFDRPPLLHLAFQALDKFIFELGRFPFAGSEDDALKFISFASYINDSLGDGKLEDINPKLLRYFAFGSRAVLNPMAAVFGGIVGQEVVKACSGKFHPLFQFFYFDSVESLPSEPLDPNDFRPVNGRYDAQISVFGHKLQKKLEDSKVFVVGSGALGCEFLKNLALMGVSCGSQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAAAINPSFNIEALQNRVGSETENVFNDTFWENLSVVVNALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTENYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLSNPSEYTNAMKNAGDAQARDNLERVLECLDREKCETFEDCITWARLKFEDYFVNRVKQLIYTFPEDAATSTGALFWSAPKRFPRPLQFSATDLGHLYFVLSASILRAETFGIPIPDWGKNPRKMAEAVDRVIVPDFQPKKDVKIVTDEKATSLSTASIDDAAVINDLVIKLERCRANLSPVFRMKPIQFEKDDDTNYHMDVIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKALDGGHKVEDYRNTFANLALPLFSMAEPVPPKIIKHQDMSWTVWDRWILGNNPTLRELLEWLKAKGLNAYSISCGSCLLYNSMFPRHKDRMDKKVADLARDVAKLEIPSYRRHLDVVVACEDDEDNDIDIPQISVYFR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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