SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G19070 | AT | Annotation by Michelle Graham. TAIR10: spermidine hydroxycinnamoyl transferase | chr2:8260185-8261958 REVERSE LENGTH=451 | SoyBase | E_val: 5.00E-84 | ISS |
| GO:0009555 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen development | SoyBase | N/A | ISS |
| GO:0010584 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen exine formation | SoyBase | N/A | ISS |
| GO:0080088 | GO-bp | Annotation by Michelle Graham. GO Biological Process: spermidine hydroxycinnamate conjugate biosynthetic process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0016410 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: N-acyltransferase activity | SoyBase | N/A | ISS |
| GO:0016747 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring acyl groups other than amino-acyl groups | SoyBase | N/A | ISS |
| GO:0050734 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydroxycinnamoyltransferase activity | SoyBase | N/A | ISS |
| GO:0080072 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: spermidine:sinapoyl CoA N-acyltransferase activity | SoyBase | N/A | ISS |
| GO:0080073 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: spermidine:coumaroyl CoA N-acyltransferase activity | SoyBase | N/A | ISS |
| GO:0080074 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: spermidine:caffeoyl CoA N-acyltransferase activity | SoyBase | N/A | ISS |
| GO:0080075 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: spermidine:feruloyl CoA N-acyltransferase activity | SoyBase | N/A | ISS |
| PF02458 | PFAM | Transferase family | JGI | ISS | |
| UniRef100_G7J1R6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Anthranilate N-benzoyltransferase protein n=1 Tax=Medicago truncatula RepID=G7J1R6_MEDTR | SoyBase | E_val: 1.00E-141 | ISS |
| UniRef100_UPI000233D87E | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233D87E related cluster n=1 Tax=unknown RepID=UPI000233D87E | SoyBase | E_val: 0 | ISS |
|
Glyma11g29070 not represented in the dataset |
Glyma11g29070 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g166600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g29070.1 sequence type=CDS gene model=Glyma11g29070 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAAACCATTGTGGCTTCTTACAACATCACTCCAAATCAACCAACTCCAAAGGACCCTTTATGGCTATCCGATAGTGACCAAATCGGGGTCCTAGGTCATGTATCCATTCTCTACATTTACAGATCAGCAAAAGAACACAACAACAACACCGTTGAGAGGATGAAGAACTCTCTTAGCAAGCTTCTATCGTACTACTATCCAGTAGCTGGCAGGTTAAGGTTGTCAAAAAGTGGTCGAATGGAATTGGATTGCAACGCAAAGGGAGTGACATTGCTTGAAGCCGAAACCACAAACACATTTGTTGATTATGGAGACGACTTTTCACCGTCCGAGTTCACCGATGAACTCATTCCAAAACTTGATGATACTCAACAACCTATAGAGGAGATTCCCCTACTGCTGGTGCAATTAACAAGGTTCCATAGTGGTGGTGATTGTGAAGGCCTTGCCATTGGAGTTCTTCTATCTCATCCTTTGACCGATGCCACCGGCATCATTGACTTCATGAACAGATGGGCAAAGCTGTCTCGGGGAGAAGAACTAGACCCTAATGAAATCCCGTTTCTTGATCGAACACTACTCAAATTCCCAGACATTTTGTTGGAGAAACCGAGGGAAGTAAATACTAGAGAGATTAGTAAACTTGACACCAGTACACTTCAACATATTCCAACATCAAAACTGTTAGATCAGTGGAAGAAGCCTGTGGTGCCACAAACACCAGAAGATGATGGGATAGATAAGCCAAAGAAGAGAAGTGGTGCAATGCTAAAACTCACATCAAGCCAGGTGGAGAGGCTAAAGAATAAGGCTATGGCTAATAACCATCAATCTTCAAAACAAGGGTCAAGACCTAATTATAGCAGATTTGAAGTTGTTGCTGCTCATATATGGAGGTGTGCATCTAAGGCTCTTGGTGATGACCTAACTCAAGTTCGGTTCAGTGTTAATTTTCGCAATAGAATGAACCCACCTCTCCCTCATAACTATTTTGGCAATGCTGTGGCAAACGTAGCCACACCTGAGGGAGATATCATATCAAACCCATTAGGTTTTGCTGCTCATAAGATAAGGGAAGCATCTCATGCAGTCACGGACGAGTTTGTAAAGTCACAATTAAACGTTAGTCGTTTAGGCCAAGTGCAATTGGATAACATAAGGGCTTTCTTCATGCGACAAGGACACCGTGTGAATATCCCTTATGCTTTGAATCATAATGTTTTGTTCCTCACAAGCTTCACTAACATGCCAGTGTATGAATCAGATTTTGGTTGGGGAAAGCCAGTGCATTTTGGCTTAGCAAGTAGATCTCCAGCAGATAGGGCTGCAATTCTTCCAAGCCCAGATGGAGATGGTGTTATTGTAGCCTTATTTTTTCAGACAGCACTTATGCAGCTTTTCAAAAATTACTTTTATGAGGATATGTATTTATCCTTGTTATAG
>Glyma11g29070.1 sequence type=predicted peptide gene model=Glyma11g29070 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKTIVASYNITPNQPTPKDPLWLSDSDQIGVLGHVSILYIYRSAKEHNNNTVERMKNSLSKLLSYYYPVAGRLRLSKSGRMELDCNAKGVTLLEAETTNTFVDYGDDFSPSEFTDELIPKLDDTQQPIEEIPLLLVQLTRFHSGGDCEGLAIGVLLSHPLTDATGIIDFMNRWAKLSRGEELDPNEIPFLDRTLLKFPDILLEKPREVNTREISKLDTSTLQHIPTSKLLDQWKKPVVPQTPEDDGIDKPKKRSGAMLKLTSSQVERLKNKAMANNHQSSKQGSRPNYSRFEVVAAHIWRCASKALGDDLTQVRFSVNFRNRMNPPLPHNYFGNAVANVATPEGDIISNPLGFAAHKIREASHAVTDEFVKSQLNVSRLGQVQLDNIRAFFMRQGHRVNIPYALNHNVLFLTSFTNMPVYESDFGWGKPVHFGLASRSPADRAAILPSPDGDGVIVALFFQTALMQLFKNYFYEDMYLSLL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
