Glyma11g29070 - SoyBase

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Report for Sequence Feature Glyma11g29070

Feature Type:	gene_model
Chromosome:	Gm11
Start:	29652975
stop:	29654420
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g29070

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G19070	AT	Annotation by Michelle Graham. TAIR10: spermidine hydroxycinnamoyl transferase \| chr2:8260185-8261958 REVERSE LENGTH=451	SoyBase	E_val: 5.00E-84	ISS
GO:0009555	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen development	SoyBase	N/A	ISS
GO:0010584	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen exine formation	SoyBase	N/A	ISS
GO:0080088	GO-bp	Annotation by Michelle Graham. GO Biological Process: spermidine hydroxycinnamate conjugate biosynthetic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0016410	GO-mf	Annotation by Michelle Graham. GO Molecular Function: N-acyltransferase activity	SoyBase	N/A	ISS
GO:0016747	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring acyl groups other than amino-acyl groups	SoyBase	N/A	ISS
GO:0050734	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydroxycinnamoyltransferase activity	SoyBase	N/A	ISS
GO:0080072	GO-mf	Annotation by Michelle Graham. GO Molecular Function: spermidine:sinapoyl CoA N-acyltransferase activity	SoyBase	N/A	ISS
GO:0080073	GO-mf	Annotation by Michelle Graham. GO Molecular Function: spermidine:coumaroyl CoA N-acyltransferase activity	SoyBase	N/A	ISS
GO:0080074	GO-mf	Annotation by Michelle Graham. GO Molecular Function: spermidine:caffeoyl CoA N-acyltransferase activity	SoyBase	N/A	ISS
GO:0080075	GO-mf	Annotation by Michelle Graham. GO Molecular Function: spermidine:feruloyl CoA N-acyltransferase activity	SoyBase	N/A	ISS
PF02458	PFAM	Transferase family	JGI		ISS
UniRef100_G7J1R6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Anthranilate N-benzoyltransferase protein n=1 Tax=Medicago truncatula RepID=G7J1R6_MEDTR	SoyBase	E_val: 1.00E-141	ISS
UniRef100_UPI000233D87E	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233D87E related cluster n=1 Tax=unknown RepID=UPI000233D87E	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma11g29070

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma11g29070 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g166600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g29070

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma11g29070

Limit To All Plant Sequences

>Glyma11g29070.1   sequence type=CDS   gene model=Glyma11g29070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAACCATTGTGGCTTCTTACAACATCACTCCAAATCAACCAACTCCAAAGGACCCTTTATGGCTATCCGATAGTGACCAAATCGGGGTCCTAGGTCATGTATCCATTCTCTACATTTACAGATCAGCAAAAGAACACAACAACAACACCGTTGAGAGGATGAAGAACTCTCTTAGCAAGCTTCTATCGTACTACTATCCAGTAGCTGGCAGGTTAAGGTTGTCAAAAAGTGGTCGAATGGAATTGGATTGCAACGCAAAGGGAGTGACATTGCTTGAAGCCGAAACCACAAACACATTTGTTGATTATGGAGACGACTTTTCACCGTCCGAGTTCACCGATGAACTCATTCCAAAACTTGATGATACTCAACAACCTATAGAGGAGATTCCCCTACTGCTGGTGCAATTAACAAGGTTCCATAGTGGTGGTGATTGTGAAGGCCTTGCCATTGGAGTTCTTCTATCTCATCCTTTGACCGATGCCACCGGCATCATTGACTTCATGAACAGATGGGCAAAGCTGTCTCGGGGAGAAGAACTAGACCCTAATGAAATCCCGTTTCTTGATCGAACACTACTCAAATTCCCAGACATTTTGTTGGAGAAACCGAGGGAAGTAAATACTAGAGAGATTAGTAAACTTGACACCAGTACACTTCAACATATTCCAACATCAAAACTGTTAGATCAGTGGAAGAAGCCTGTGGTGCCACAAACACCAGAAGATGATGGGATAGATAAGCCAAAGAAGAGAAGTGGTGCAATGCTAAAACTCACATCAAGCCAGGTGGAGAGGCTAAAGAATAAGGCTATGGCTAATAACCATCAATCTTCAAAACAAGGGTCAAGACCTAATTATAGCAGATTTGAAGTTGTTGCTGCTCATATATGGAGGTGTGCATCTAAGGCTCTTGGTGATGACCTAACTCAAGTTCGGTTCAGTGTTAATTTTCGCAATAGAATGAACCCACCTCTCCCTCATAACTATTTTGGCAATGCTGTGGCAAACGTAGCCACACCTGAGGGAGATATCATATCAAACCCATTAGGTTTTGCTGCTCATAAGATAAGGGAAGCATCTCATGCAGTCACGGACGAGTTTGTAAAGTCACAATTAAACGTTAGTCGTTTAGGCCAAGTGCAATTGGATAACATAAGGGCTTTCTTCATGCGACAAGGACACCGTGTGAATATCCCTTATGCTTTGAATCATAATGTTTTGTTCCTCACAAGCTTCACTAACATGCCAGTGTATGAATCAGATTTTGGTTGGGGAAAGCCAGTGCATTTTGGCTTAGCAAGTAGATCTCCAGCAGATAGGGCTGCAATTCTTCCAAGCCCAGATGGAGATGGTGTTATTGTAGCCTTATTTTTTCAGACAGCACTTATGCAGCTTTTCAAAAATTACTTTTATGAGGATATGTATTTATCCTTGTTATAG

Predicted protein sequences of Glyma11g29070

Limit To All Plant Sequences

>Glyma11g29070.1   sequence type=predicted peptide   gene model=Glyma11g29070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKTIVASYNITPNQPTPKDPLWLSDSDQIGVLGHVSILYIYRSAKEHNNNTVERMKNSLSKLLSYYYPVAGRLRLSKSGRMELDCNAKGVTLLEAETTNTFVDYGDDFSPSEFTDELIPKLDDTQQPIEEIPLLLVQLTRFHSGGDCEGLAIGVLLSHPLTDATGIIDFMNRWAKLSRGEELDPNEIPFLDRTLLKFPDILLEKPREVNTREISKLDTSTLQHIPTSKLLDQWKKPVVPQTPEDDGIDKPKKRSGAMLKLTSSQVERLKNKAMANNHQSSKQGSRPNYSRFEVVAAHIWRCASKALGDDLTQVRFSVNFRNRMNPPLPHNYFGNAVANVATPEGDIISNPLGFAAHKIREASHAVTDEFVKSQLNVSRLGQVQLDNIRAFFMRQGHRVNIPYALNHNVLFLTSFTNMPVYESDFGWGKPVHFGLASRSPADRAAILPSPDGDGVIVALFFQTALMQLFKNYFYEDMYLSLL*

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