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Report for Sequence Feature Glyma11g28880

Feature Type:gene_model
Chromosome:Gm11
Start:29328328
stop:29331005
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma11g28880
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G58120AT Annotation by Michelle Graham. TAIR10: Basic-leucine zipper (bZIP) transcription factor family protein | chr3:21521289-21523078 REVERSE LENGTH=329 SoyBaseE_val: 2.00E-10ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0009410GO-bp Annotation by Michelle Graham. GO Biological Process: response to xenobiotic stimulus SoyBaseN/AISS
GO:0030968GO-bp Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response SoyBaseN/AISS
GO:0045893GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0043565GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding SoyBaseN/AISS
GO:0046983GO-mf Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity SoyBaseN/AISS
PF00170PFAM bZIP transcription factor JGI ISS
UniRef100_E5GBG1UniRef Annotation by Michelle Graham. Most informative UniRef hit: BZIP transcription factor n=1 Tax=Cucumis melo subsp. melo RepID=E5GBG1_CUCME SoyBaseE_val: 6.00E-08ISS
UniRef100_G7IXW1UniRef Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Medicago truncatula RepID=G7IXW1_MEDTR SoyBaseE_val: 1.00E-10ISS

Expression Patterns of Glyma11g28880
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g28880 not represented in the dataset
Glyma11g28880 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma11g28880 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.11g167400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma11g28880
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma11g28880
>Glyma11g28880.1   sequence type=CDS   gene model=Glyma11g28880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAACAATAAAATAGGTCATTCAAAGGAAAACATGGTTGCCTCTAAACCCCCCTTGATCCCCATTTTGTCATTTCAAAGTTTGCAAAAGACTTTCTATAGGGATGCTCCTGGAACTAGTAACTCTACTCCTCAAAATGAAAATAACAGGTTAGAGAATCCTGCAGATATAAATCCAGCTCTTGTTGCTTCCGAGTCTACTCCAAAACTAATAGTGGATCAAACTCAGGCAAAAAGCCCTGATGCCGATCTTAAAAAATTACGGAGAATGGAGTCTAATCGGCTTTCATCCCGAAGATCGTGGATGAAGAAGTTGATATATTTGACCAATTTGGAAAATCAAGTAAAAAATTTAGAGGATCAATTAGCTCAACTTCGACCACAAATTGCTTCCCATGAATCCCAGAAACAATTCTTAATGCTAGAAAAACAGACACTGCTCCAGAGAATGGAAATTCTTGAGAAAGAGATAAACTTCAGAGAGTCTGATCTTGAGATGAAAAAAGAACAAGTGAAATATCTGAGGGAATCCTATCCGATGAATCAAGCTAAGCAATTGCAAGAACAATTTCTTAATTGGAATATTGGTCTGCAGGATCCAATGTCCAATGATCCAATCCCAAATTACTATACAAACTCGGATCAAGTTGCAGGAAATTATGAACTAGAGACTTCATACATGCTGCCTGCAGACCTAAGCCAGATGTGGATGCCTAATGTTCCTAATATGAATGAAGTGAACTTGAGTCTTCCCAACAACATGGGATCAATGGTTTCAAATGTGTATGAAACCAACTTGAGTCATCCCAACTACATGGGATCAATGGTTTCAAATGTTCTTCCCAACAACATGGGACAAATGGTTCCAATCATGGATGAAACAAACTTGAATCTTCCCAATTTCATGGGATCAATGGCTCCAGAAATGAATGAAATGAACTTTAGTCTTCCCAGCAACATAGGATCAATGGCACCAAATCCTCCAAGTGGAACTTTCCCAAATCCGAACCTTGATTAG
Predicted protein sequences of Glyma11g28880
>Glyma11g28880.1   sequence type=predicted peptide   gene model=Glyma11g28880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MENNKIGHSKENMVASKPPLIPILSFQSLQKTFYRDAPGTSNSTPQNENNRLENPADINPALVASESTPKLIVDQTQAKSPDADLKKLRRMESNRLSSRRSWMKKLIYLTNLENQVKNLEDQLAQLRPQIASHESQKQFLMLEKQTLLQRMEILEKEINFRESDLEMKKEQVKYLRESYPMNQAKQLQEQFLNWNIGLQDPMSNDPIPNYYTNSDQVAGNYELETSYMLPADLSQMWMPNVPNMNEVNLSLPNNMGSMVSNVYETNLSHPNYMGSMVSNVLPNNMGQMVPIMDETNLNLPNFMGSMAPEMNEMNFSLPSNIGSMAPNPPSGTFPNPNLD*






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