Glyma11g28650 - SoyBase

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Report for Sequence Feature Glyma11g28650

Feature Type:	gene_model
Chromosome:	Gm11
Start:	28905637
stop:	28907077
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g28650

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G33540	AT	Annotation by Michelle Graham. TAIR10: serine carboxypeptidase-like 18 \| chr1:12162349-12164700 REVERSE LENGTH=446	SoyBase	E_val: 6.00E-23	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0004185	GO-mf	Annotation by Michelle Graham. GO Molecular Function: serine-type carboxypeptidase activity	SoyBase	N/A	ISS
PTHR11802	Panther	SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE	JGI		ISS
PTHR11802:SF7	Panther	SERINE CARBOXYPEPTIDASE I (PLANTS)	JGI		ISS
PF00450	PFAM	Serine carboxypeptidase	JGI		ISS
UniRef100_G7J548	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Serine carboxypeptidase-like protein n=1 Tax=Medicago truncatula RepID=G7J548_MEDTR	SoyBase	E_val: 1.00E-34	ISS
UniRef100_I1K877	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K877_SOYBN	SoyBase	E_val: 2.00E-45	ISS

Expression Patterns of Glyma11g28650

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma11g28650 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma11g28650

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma11g28650

Limit To All Plant Sequences

>Glyma11g28650.1   sequence type=CDS   gene model=Glyma11g28650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCAGTAATCGTTGTTGTGCTTGATATCAGTTACGTGAAATTCTATTGTTTTATTGAGTCAGAGAACGATCCTAAAGGGAACCCTCTCCTACTTTGGCTAACTGGGGTCCCGATTGCTCTGCTTTCTCTGGCCTTCGGGATAAACTTATACTCCGTAAGTAGCATTACATTTGTGGATTTGCTTGTAGGTACTAGCTTCTCTTATCCCAAAACAAAACGTGATGTTCAGCAAAGCAGCTCTAAGCTTTGGCTAATTGATCATCCGAAATTTCTCTCAAATGAAGTGTACATTGCTGGTGACTCATACTGCGACATTTTTGTCCCAGTTATTGTTCAAGAAATTTCAAGCGGAAACGAAGGTGGTATCCAACCATGGATATATGTCCAGGTTTGTGCATTTAAATTACAACTATGA

Predicted protein sequences of Glyma11g28650

Limit To All Plant Sequences

>Glyma11g28650.1   sequence type=predicted peptide   gene model=Glyma11g28650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
PVIVVVLDISYVKFYCFIESENDPKGNPLLLWLTGVPIALLSLAFGINLYSVSSITFVDLLVGTSFSYPKTKRDVQQSSSKLWLIDHPKFLSNEVYIAGDSYCDIFVPVIVQEISSGNEGGIQPWIYVQVCAFKLQL*

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