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Report for Sequence Feature Glyma11g28650

Feature Type:gene_model
Chromosome:Gm11
Start:28905637
stop:28907077
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma11g28650
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G33540AT Annotation by Michelle Graham. TAIR10: serine carboxypeptidase-like 18 | chr1:12162349-12164700 REVERSE LENGTH=446 SoyBaseE_val: 6.00E-23ISS
GO:0006508GO-bp Annotation by Michelle Graham. GO Biological Process: proteolysis SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0004185GO-mf Annotation by Michelle Graham. GO Molecular Function: serine-type carboxypeptidase activity SoyBaseN/AISS
PTHR11802Panther SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE JGI ISS
PTHR11802:SF7Panther SERINE CARBOXYPEPTIDASE I (PLANTS) JGI ISS
PF00450PFAM Serine carboxypeptidase JGI ISS
UniRef100_G7J548UniRef Annotation by Michelle Graham. Most informative UniRef hit: Serine carboxypeptidase-like protein n=1 Tax=Medicago truncatula RepID=G7J548_MEDTR SoyBaseE_val: 1.00E-34ISS
UniRef100_I1K877UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K877_SOYBN SoyBaseE_val: 2.00E-45ISS

Expression Patterns of Glyma11g28650
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g28650 not represented in the dataset
Glyma11g28650 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma11g28650 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma11g28650
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma11g28650
>Glyma11g28650.1   sequence type=CDS   gene model=Glyma11g28650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCAGTAATCGTTGTTGTGCTTGATATCAGTTACGTGAAATTCTATTGTTTTATTGAGTCAGAGAACGATCCTAAAGGGAACCCTCTCCTACTTTGGCTAACTGGGGTCCCGATTGCTCTGCTTTCTCTGGCCTTCGGGATAAACTTATACTCCGTAAGTAGCATTACATTTGTGGATTTGCTTGTAGGTACTAGCTTCTCTTATCCCAAAACAAAACGTGATGTTCAGCAAAGCAGCTCTAAGCTTTGGCTAATTGATCATCCGAAATTTCTCTCAAATGAAGTGTACATTGCTGGTGACTCATACTGCGACATTTTTGTCCCAGTTATTGTTCAAGAAATTTCAAGCGGAAACGAAGGTGGTATCCAACCATGGATATATGTCCAGGTTTGTGCATTTAAATTACAACTATGA
Predicted protein sequences of Glyma11g28650
>Glyma11g28650.1   sequence type=predicted peptide   gene model=Glyma11g28650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
PVIVVVLDISYVKFYCFIESENDPKGNPLLLWLTGVPIALLSLAFGINLYSVSSITFVDLLVGTSFSYPKTKRDVQQSSSKLWLIDHPKFLSNEVYIAGDSYCDIFVPVIVQEISSGNEGGIQPWIYVQVCAFKLQL*






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