Glyma11g28420 - SoyBase

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Report for Sequence Feature Glyma11g28420

Feature Type:	gene_model
Chromosome:	Gm11
Start:	28554715
stop:	28558515
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g28420

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G58575	AT	Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: Sgf11, transcriptional regulation (InterPro:IPR013246); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). \| chr5:23674399-23675224 FORWARD LENGTH=181	SoyBase	E_val: 6.00E-82	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG2612	KOG	Predicted integral membrane protein	JGI		ISS
PF08209	PFAM	Sgf11 (transcriptional regulation protein)	JGI		ISS
UniRef100_I1LLP0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LLP0_SOYBN	SoyBase	E_val: 6.00E-131	ISS
UniRef100_Q94BV2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AT5g58570/mzn1_20 n=1 Tax=Arabidopsis thaliana RepID=Q94BV2_ARATH	SoyBase	E_val: 3.00E-79	ISS

Expression Patterns of Glyma11g28420

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma11g28420 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g168600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g28420

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma11g28420

Limit To All Plant Sequences

>Glyma11g28420.2   sequence type=transcript   gene model=Glyma11g28420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAAAAAAAATAGTTTGAACTCATATTTGAGTATTTACCCTAAATTTTAGTTGTATATGGGTCTTTTATTTGGAGGCAGGGTCAAATAACACAACCCTCATGGGAGGTGCCAATAGTAGACCCCTAAAATTTTCTTTTCTAGCCCAAAAGTTTAGGCTTTTTCGAAATTGTACCCCAGTGGCATTTGAGGGGTTGCTCTGTGAATCACAGAATCTCTGTTAGCACTCTCCTCTCGACGATTCCCTGTGATCTCTCTCTCTCTTTCTCTCTCTTTCTCTCTCAGTCTTCTCTCGCTGTGGTTCAGATTTCAGAGCAGGATCCAAAAGCCTTGCTTGGTCAAGACTCATTCATGTCTGTTCCTAATGAGGAAAACTTGTCGTCACATTCCCAGAGAAAGATGGTTCAGTGATGCATGAAGTGGAAAGTCTATCTTGAACTGCCAACCTTTCTATCTGCTCTCATATCTTTCTTTTAGAATGAGGATGGAGGGAATTCTTTCTTCTCATTTTTTCTTGGATCTCCTTGATTCCATCATAGTTGATGTGGCATCAGAGTGTCACAGAGTAGCAAGGCTGGGGCTTGATTCTAATTTGGAAGAAGAAGATGAAGAATTGAAGCTATCGGCACAAGCCAGGGTTAGGGTGGCTGATCCTAGTAACAGTAATGAAGCAAATGGCAAGTATGTGGTTGACATATTTGGACAAACCCATCCTCCTGTGGCAAATGAAATATTTGATTGCATGAATTGTGGTCGATCCATCATGGCTGGGAGGTTTGCTCCACATTTGGAGAAGTGCATGGGAAAGGGTAGGAAGGCACGTCTGAAAGTGACAAGAAGCAGCACAGCCGCGCAGAACCGGTATTCACGAGGCAGTCCTAGTCCTGGTGAGGAGCACTCAAATGGGACACTGGAGTCATGAACTAGTTCATGTGTAATGGCTGGAATACAGGATCTCTGTCATACCTTGAACTTGTTTCTTCGCCGGGAGATGTGGCTGAATTTAATTGTGTTTGAAAATAATATTTCAAACATTTTGGACCTAAACATAACAACCATCGTTGCCTACATCCTCGAATTGTTGTCTACCTTAAAAAAAAAAAACTTTGCTTTTTACAGTGAGTTCCATTGTAATTTTATTATGTTTTACTCCTAGTTCCGTTGTAATTTTATTATAATTTTACTATCTGTTAACATATGTATATTGTGTGCAACTATGAACTAGTATTGTTCATGGATGAAAAGATGCTCAGGGTTGAGATGAATAATACACAGACATTTGGGAAAGTGTGTGTGTTAAGATGAAAAAATATGTAGAGTTCGTTTGATTTG

>Glyma11g28420.3   sequence type=transcript   gene model=Glyma11g28420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAAAAAAAATAGTTTGAACTCATATTTGAGTATTTACCCTAAATTTTAGTTGTATATGGGTCTTTTATTTGGAGGCAGGGTCAAATAACACAACCCTCATGGGAGGTGCCAATAGTAGACCCCTAAAATTTTCTTTTCTAGCCCAAAAGTTTAGGCTTTTTCGAAATTGTACCCCAGTGGCATTTGAGGGGTTGCTCTGTGAATCACAGAATCTCTGTTAGCACTCTCCTCTCGACGATTCCCTGTGATCTCTCTCTCTCTTTCTCTCTCTTTCTCTCTCAGTCTTCTCTCGCTGTGGTTCAGATTTCAGAGCAGGATCCAAAAGCCTTGCTTGGTCAAGACTCATTCATGTCTGTTCCTAATGAGGAAAACTTGTCGTCACATTCCCAGAGAAAGATGGTTCAGTGATGCATGAAGTGGAAAGTCTATCTTGAACTGCCAACCTTTCTATCTGCTCTCATATCTTTCTTTTAGAATGAGGATGGAGGGAATTCTTTCTTCTCATTTTTTCTTGGATCTCCTTGATTCCATCATAGTTGATGTGGCATCAGAGTGTCACAGAGTAGCAAGGCTGGGGCTTGATTCTAATTTGGAAGAAGAAGATGAAGAATTGAAGCTATCGGCACAAGCCAGGGTTAGGGTGGCTGATCCTAGTAACAGTAATGAAGCAAATGGCAAGTATGTGGTTGACATATTTGGACAAACCCATCCTCCTGTGGCAAATGAAATATTTGATTGCATGAATTGTGGTCGATCCATCATGGCTGGGAGGTTTGCTCCACATTTGGAGAAGTGCATGGGAAAGGGTAGGAAGGCACGTCTGAAAGTGACAAGAAGCAGCACAGCCGCGCAGAACCGGTATTCACGAGGCAGTCCTAGTCCTGGTTCTACATATTCTCCATATTCAAATTACTCTACCAATAGCATGAATCGGTTGGCAAATGGAACCTCCACTTTTGCAGGTGAGGAGCACTCAAATGGGACACTGGAGTCATGAACTAGTTCATGTGTAATGGCTGGAATACAGGATCTCTGTCATACCTTGAACTTGTTTCTTCGCCGGGAGATGTGGCTGAATTTAATTGTGTTTGAAAATAATATTTCAAACATTTTGGACCTAAACATAACAACCATCGTTGCCTACATCCTCGAATTGTTGTCTACCTTAAAAAAAAAAAACTTTGCTTTTTACAGTGAGTTCCATTGTAATTTTATTATGTTTTACTCCTAGTTCCGTTGTAATTTTATTATAATTTTACTATCTGTTAACATATGTATATTGTGTGCAACTATGAACTAGTATTGTTCATGGATGAAAAGATGCTCAGGGTTGAGATGAATAATACACAGACATTTGGGAAAGTGTGTGTGTTAAGATGAAAAAATATGTAGAGTTCGTTTGATTTG

>Glyma11g28420.4   sequence type=transcript   gene model=Glyma11g28420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAAAAAAAATAGTTTGAACTCATATTTGAGTATTTACCCTAAATTTTAGTTGTATATGGGTCTTTTATTTGGAGGCAGGGTCAAATAACACAACCCTCATGGGAGGTGCCAATAGTAGACCCCTAAAATTTTCTTTTCTAGCCCAAAAGTTTAGGCTTTTTCGAAATTGTACCCCAGTGGCATTTGAGGGGTTGCTCTGTGAATCACAGAATCTCTGTTAGCACTCTCCTCTCGACGATTCCCTGTGATCTCTCTCTCTCTTTCTCTCTCTTTCTCTCTCAGTCTTCTCTCGCTGTGGTTCAGATTTCAGAGCAGGATCCAAAAGCCTTGCTTGGTCAAGACTCATTCATGTCTGTTCCTAATGAGGAAAACTTGTCGTCACATTCCCAGAGAAAGATGGTTCAGTGATGCATGAAGTGGAAAGTCTATCTTGAACTGCCAACCTTTCTATCTGCTCTCATATCTTTCTTTTAGAATGAGGATGGAGGGAATTCTTTCTTCTCATTTTTTCTTGGATCTCCTTGATTCCATCATAGTTGATGTGGCATCAGAGTGTCACAGAGTAGCAAGGCTGGGGCTTGATTCTAATTTGGAAGAAGAAGATGAAGAATTGAAGCTATCGGCACAAGCCAGGGTTAGGGTGGCTGATCCTAGTAACAGTAATGAAGCAAATGGCAAGTATGTGGTTGACATATTTGGACAAACCCATCCTCCTGTGGCAAATGAAATATTTGATTGCATGAATTGTGGTCGATCCATCATGGCTGGGAGGTTTGCTCCACATTTGGAGAAGTGCATGGGAAAGGGTAGGAAGGCACGTCTGAAAGTGACAAGAAGCAGCACAGCCGCGCAGAACCGGTGAGGAGCACTCAAATGGGACACTGGAGTCATGAACTAGTTCATGTGTAATGGCTGGAATACAGGATCTCTGTCATACCTTGAACTTGTTTCTTCGCCGGGAGATGTGGCTGAATTTAATTGTGTTTGAAAATAATATTTCAAACATTTTGGACCTAAACATAACAACCATCGTTGCCTACATCCTCGAATTGTTGTCTACCTTAAAAAAAAAAAACTTTGCTTTTTACAGTGAGTTCCATTGTAATTTTATTATGTTTTACTCCTAGTTCCGTTGTAATTTTATTATAATTTTACTATCTGTTAACATATGTATATTGTGTGCAACTATGAACTAGTATTGTTCATGGATGAAAAGATGCTCAGGGTTGAGATGAATAATACACAGACATTTGGGAAAGTGTGTGTGTTAAGATGAAAAAATATGTAGAGTTCGTTTGATTTG

Coding sequences of Glyma11g28420

Limit To All Plant Sequences

>Glyma11g28420.1   sequence type=CDS   gene model=Glyma11g28420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTGTTCCTAATGAGGAAAACTTGTCGTCACATTCCCAGCTTTCTTCTCATTTTTTCTTGGATCTCCTTGATTCCATCATAGTTGATGTGGCATCAGAGTGTCACAGAGTAGCAAGGCTGGGGCTTGATTCTAATTTGGAAGAAGAAGATGAAGAATTGAAGCTATCGGCACAAGCCAGGGTTAGGGTGGCTGATCCTAGTAACAGTAATGAAGCAAATGGCAAGTATGTGGTTGACATATTTGGACAAACCCATCCTCCTGTGGCAAATGAAATATTTGATTGCATGAATTGTGGTCGATCCATCATGGCTGGGAGGTTTGCTCCACATTTGGAGAAGTGCATGGGAAAGGGTAGGAAGGCACGTCTGAAAGTGACAAGAAGCAGCACAGCCGCGCAGAACCGGTATTCACGAGGCAGTCCTAGTCCTGGTTCTACATATTCTCCATATTCAAATTACTCTACCAATAGCATGAATCGGTTGGCAAATGGAACCTCCACTTTTGCAGGTGAGGAGCACTCAAATGGGACACTGGAGTCATGA

>Glyma11g28420.2   sequence type=CDS   gene model=Glyma11g28420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGGATGGAGGGAATTCTTTCTTCTCATTTTTTCTTGGATCTCCTTGATTCCATCATAGTTGATGTGGCATCAGAGTGTCACAGAGTAGCAAGGCTGGGGCTTGATTCTAATTTGGAAGAAGAAGATGAAGAATTGAAGCTATCGGCACAAGCCAGGGTTAGGGTGGCTGATCCTAGTAACAGTAATGAAGCAAATGGCAAGTATGTGGTTGACATATTTGGACAAACCCATCCTCCTGTGGCAAATGAAATATTTGATTGCATGAATTGTGGTCGATCCATCATGGCTGGGAGGTTTGCTCCACATTTGGAGAAGTGCATGGGAAAGGGTAGGAAGGCACGTCTGAAAGTGACAAGAAGCAGCACAGCCGCGCAGAACCGGTATTCACGAGGCAGTCCTAGTCCTGGTGAGGAGCACTCAAATGGGACACTGGAGTCATGA

>Glyma11g28420.3   sequence type=CDS   gene model=Glyma11g28420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGGATGGAGGGAATTCTTTCTTCTCATTTTTTCTTGGATCTCCTTGATTCCATCATAGTTGATGTGGCATCAGAGTGTCACAGAGTAGCAAGGCTGGGGCTTGATTCTAATTTGGAAGAAGAAGATGAAGAATTGAAGCTATCGGCACAAGCCAGGGTTAGGGTGGCTGATCCTAGTAACAGTAATGAAGCAAATGGCAAGTATGTGGTTGACATATTTGGACAAACCCATCCTCCTGTGGCAAATGAAATATTTGATTGCATGAATTGTGGTCGATCCATCATGGCTGGGAGGTTTGCTCCACATTTGGAGAAGTGCATGGGAAAGGGTAGGAAGGCACGTCTGAAAGTGACAAGAAGCAGCACAGCCGCGCAGAACCGGTATTCACGAGGCAGTCCTAGTCCTGGTTCTACATATTCTCCATATTCAAATTACTCTACCAATAGCATGAATCGGTTGGCAAATGGAACCTCCACTTTTGCAGGTGAGGAGCACTCAAATGGGACACTGGAGTCATGA

>Glyma11g28420.4   sequence type=CDS   gene model=Glyma11g28420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGGATGGAGGGAATTCTTTCTTCTCATTTTTTCTTGGATCTCCTTGATTCCATCATAGTTGATGTGGCATCAGAGTGTCACAGAGTAGCAAGGCTGGGGCTTGATTCTAATTTGGAAGAAGAAGATGAAGAATTGAAGCTATCGGCACAAGCCAGGGTTAGGGTGGCTGATCCTAGTAACAGTAATGAAGCAAATGGCAAGTATGTGGTTGACATATTTGGACAAACCCATCCTCCTGTGGCAAATGAAATATTTGATTGCATGAATTGTGGTCGATCCATCATGGCTGGGAGGTTTGCTCCACATTTGGAGAAGTGCATGGGAAAGGGTAGGAAGGCACGTCTGAAAGTGACAAGAAGCAGCACAGCCGCGCAGAACCGGTGA

Predicted protein sequences of Glyma11g28420

Limit To All Plant Sequences

>Glyma11g28420.1   sequence type=predicted peptide   gene model=Glyma11g28420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSVPNEENLSSHSQLSSHFFLDLLDSIIVDVASECHRVARLGLDSNLEEEDEELKLSAQARVRVADPSNSNEANGKYVVDIFGQTHPPVANEIFDCMNCGRSIMAGRFAPHLEKCMGKGRKARLKVTRSSTAAQNRYSRGSPSPGSTYSPYSNYSTNSMNRLANGTSTFAGEEHSNGTLES*

>Glyma11g28420.2   sequence type=predicted peptide   gene model=Glyma11g28420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRMEGILSSHFFLDLLDSIIVDVASECHRVARLGLDSNLEEEDEELKLSAQARVRVADPSNSNEANGKYVVDIFGQTHPPVANEIFDCMNCGRSIMAGRFAPHLEKCMGKGRKARLKVTRSSTAAQNRYSRGSPSPGEEHSNGTLES*

>Glyma11g28420.3   sequence type=predicted peptide   gene model=Glyma11g28420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRMEGILSSHFFLDLLDSIIVDVASECHRVARLGLDSNLEEEDEELKLSAQARVRVADPSNSNEANGKYVVDIFGQTHPPVANEIFDCMNCGRSIMAGRFAPHLEKCMGKGRKARLKVTRSSTAAQNRYSRGSPSPGSTYSPYSNYSTNSMNRLANGTSTFAGEEHSNGTLES*

>Glyma11g28420.4   sequence type=predicted peptide   gene model=Glyma11g28420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRMEGILSSHFFLDLLDSIIVDVASECHRVARLGLDSNLEEEDEELKLSAQARVRVADPSNSNEANGKYVVDIFGQTHPPVANEIFDCMNCGRSIMAGRFAPHLEKCMGKGRKARLKVTRSSTAAQNR*

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