Glyma11g28190 - SoyBase

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Report for Sequence Feature Glyma11g28190

Feature Type:	gene_model
Chromosome:	Gm11
Start:	28261546
stop:	28264529
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g28190

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G30090	AT	Annotation by Michelle Graham. TAIR10: Acyl-CoA N-acyltransferases (NAT) superfamily protein \| chr2:12843583-12845597 REVERSE LENGTH=386	SoyBase	E_val: 3.00E-136	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0008080	GO-mf	Annotation by Michelle Graham. GO Molecular Function: N-acetyltransferase activity	SoyBase	N/A	ISS
PTHR23091	Panther	N-TERMINAL ACETYLTRANSFERASE	JGI		ISS
PTHR23091:SF21	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00583	PFAM	Acetyltransferase (GNAT) family	JGI		ISS
UniRef100_B9SGZ0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: N-acetyltransferase, putative n=1 Tax=Ricinus communis RepID=B9SGZ0_RICCO	SoyBase	E_val: 3.00E-126	ISS
UniRef100_I1LLN9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LLN9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma11g28190

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma11g28190 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g168800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g28190

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma11g28190

Limit To All Plant Sequences

>Glyma11g28190.1   sequence type=CDS   gene model=Glyma11g28190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTTCAACAAGTTCAGAATCAGAAGCTATGAGGGGCAATCTGATAGGGCTCAAGTGGAAGATCTTGAGAGAAGATGCGAGGTAGGGCCATCAGAAAGCGTGTTTCTCTTCACAGACACTATGGGTGACCCCATTTGTAGGATCCGGAACAGTCCCATGTACATGATGCTGGTGGCAGAGTTGGAAAATGAATTGGTTGGTGTCATTCAAGGGTCTATAAAAGTGGTCACGGTTCATGGTCACCCTCCAAAGGATTTGGCAAAGGTGGGGTATGTCCTTGGCCTAAGGGTATCACCTCACCACCGGAGAAAAGGGATTGGCTCAAGCCTTGTGAAAACCCTAGAAGAATGGTTCACTTCAAAAGATGTGGACTATGCATACATGGCAACAGAGAAAGACAACCATGCCTCAGTGAGTCTCTTCATGGACAAGTTTGGCTACATCAAGTTCAGGACTCCAGCTATTCTTGTCAACCCCGTGAACCATCATTGCTTTCAAATATCACCCAACATTGAGATAACAAGGTTGAAGGTGGACCAAGCTGAGTACTTCTATAGAAGATTCATGGGGTCCACAGAGTTCTTCCCAAATGACATAGGGAATATACTTAGGAACAAGCTAAGTTTGGGGACATGGGTGGCATATTTCAAAGGTGATATTGCTTGGGGTGATTTTGGGTCAGATATTGGACAAGTACCAAATAGTTGGGCTATGCTTAGTGTATGGAATAGTGGGGAGATATTCAAGTTAAGGCTAGGGAAAGCACCTTTTTCTTGCTTGGTATGCACCAAGAGTTGGTGGTTGATTGATAAGATTTTCCCATGTTTGAAATTGCCAACCATACCTGATTTCTTCAACCCATTTGGGTTCTATTTCATGTATGGGGTGCACCGTGAAGGGCCATTTTCAGGGAAGCTAGTGAGGGCCTTGTGCCAATTTGTGCACAACATGGGTGCTGAGTCCAAGGATGAGAGCAATTGCAAGATCATTGTGACTGAAGTTGAAGGAAGAGATGAACTCAACCACCATATCCCACATTGGAAATTGCTCTCATGCCAGGAGGACTTGTGGTGCATAAAGTCGTTGAAAAATATTGAAGGGACAAATAACAACTTCCATGAATTAACAACCAAAACCCCACCAACAAGAGCTCTTTTTGTAGACCCAAGAGAGGTTTAA

Predicted protein sequences of Glyma11g28190

Limit To All Plant Sequences

>Glyma11g28190.1   sequence type=predicted peptide   gene model=Glyma11g28190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEFNKFRIRSYEGQSDRAQVEDLERRCEVGPSESVFLFTDTMGDPICRIRNSPMYMMLVAELENELVGVIQGSIKVVTVHGHPPKDLAKVGYVLGLRVSPHHRRKGIGSSLVKTLEEWFTSKDVDYAYMATEKDNHASVSLFMDKFGYIKFRTPAILVNPVNHHCFQISPNIEITRLKVDQAEYFYRRFMGSTEFFPNDIGNILRNKLSLGTWVAYFKGDIAWGDFGSDIGQVPNSWAMLSVWNSGEIFKLRLGKAPFSCLVCTKSWWLIDKIFPCLKLPTIPDFFNPFGFYFMYGVHREGPFSGKLVRALCQFVHNMGAESKDESNCKIIVTEVEGRDELNHHIPHWKLLSCQEDLWCIKSLKNIEGTNNNFHELTTKTPPTRALFVDPREV*

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