Glyma11g28160 - SoyBase

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Report for Sequence Feature Glyma11g28160

Feature Type:	gene_model
Chromosome:	Gm11
Start:	28186353
stop:	28192075
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g28160

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G42140	AT	Annotation by Michelle Graham. TAIR10: Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain \| chr5:16837547-16841640 REVERSE LENGTH=1073	SoyBase	E_val: 0	ISS
GO:0007165	GO-bp	Annotation by Michelle Graham. GO Biological Process: signal transduction	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0003682	GO-mf	Annotation by Michelle Graham. GO Molecular Function: chromatin binding	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
GO:0008536	GO-mf	Annotation by Michelle Graham. GO Molecular Function: Ran GTPase binding	SoyBase	N/A	ISS
GO:0035091	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphatidylinositol binding	SoyBase	N/A	ISS
GO:0046872	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metal ion binding	SoyBase	N/A	ISS
PTHR22870	Panther	REGULATOR OF CHROMOSOME CONDENSATION	JGI		ISS
PTHR22870:SF25	Panther	REGULATOR OF CHROMOSOME CONDENSATION-RELATED	JGI		ISS
PF00415	PFAM	Regulator of chromosome condensation (RCC1) repeat	JGI		ISS
PF01363	PFAM	FYVE zinc finger	JGI		ISS
UniRef100_G7ZXF6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Chromosome condensation regulator protein n=1 Tax=Medicago truncatula RepID=G7ZXF6_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1LLN8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1LLN8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma11g28160

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma11g28160 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma11g28160

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma11g28160

Limit To All Plant Sequences

>Glyma11g28160.2   sequence type=CDS   gene model=Glyma11g28160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTGAGCTTTTGTCAGTTTGCCAAGAGCGTCATCTTTTTATAGCATTGATGGGAAAGAAGAAGGTATTCAAGGTTACTGGAAGGGTATTGATTGCTATGAAAAATGGTGCTCAACTTCTTAAATATGGTCGTAAAGGAAAGCCCAAGTTTTGTCCATTTAGACTTTCTCGTGATGAATCATCCTTAATCTGGATCACAAGTAGTGGAGAAAGAAATCTGAAGCTATCTTCTGTCTCTAGAATTATTCTTGGACAAAGAACTATGAGATTTATTCCCTTAAATCTAATTGCATACAATACCTTGACATTCTATATTTGCAAAGATAAAGTTGAGGCAGAAGTGTGGATTGCTGGCCTCAAAGCATTGATATCTTCTGGTCAAGGTGGTCGGTCCAAAATTGATGGATGGAGTGATGGGGGTCTCATTCTTAATTCCTTTCGGCCTGACAATACAATTTCTAAAAAGTCACATGTGCCACCAGACGGAACAAACATGCAAGTGAAAGGATCTGCTTTAGATGTATTTCGTGTTAGTGTTTCCAGTGCCCCAAGTACATCTAGTCATGGATCTGCACCTGATGACTATGATGCTCTGGGGGATGTATACATATGGGGAGAGGTTACCTGTGAAAATGTTAAAGTTGGTGCTGATAAAAATGTAAATTATTTCAGCCCCAGGGCAGATGTACTTCTCCCCAGACCACTGGAATCCAATGTAGTTTTAGATGTACATCATATAGCATGTGGTGCTAGACATGCTTCTCTAGTCACTAGGCAAGGTGAAGTTTTTACATGGGGCGAAGAATCAGGAGGATGCCGTGGTCATGGTGTTGGGAAGAATGTGGTTCAACCTCGTCTAGTTGAAGCATTGACTTATACAACTGTTGATTTTGTTGCCTATGGTTATGATGCCAGTCATTGGATACCAAAGAGAATTGTTAGTCCATCAGAGGGACTTCAAATTGCATTTGTTGCTTGTGGTCCATGGTACACAACCTTGGTAACTTCAATAGCGCAGTTGTTTACATTTGGTGATGGAACATTCGGTGTCTTGAGCCATGGAGATAGGCAAAATGTTTCATATCCTAGAGAAGTGGAATCCTTATTGGGGTTGAGAACAATAGTTGTTACTTGTGGAGTGTGGCATACTGCAGCTGTTGAAGAGATCATCGCAACACACTCCAGTACAAGCATATCATCAGGTAAATTGTTTACTTGGGGTGATGGAGACAAAAATCGCCTTGGACATAGGGACAAGGAAACACGTCTTAAACCAACTTGTACTAGATTGCCGGGGGAATCAATTGAAGAAATTGCATGTAGAGCATATCATGTAGCTGTATTAACATCCAAAAATGAAGTCTATACTTGGGGGAAAGGTGCAAATGGGAGATTGGGTCATGCAGATGTTGAAGATCGTAAAACACCAGCTTTGGTTGAAGCATTGAAGGATAGACATGTGAAATATATTGCATGTGGTTCAAACAACTCTGCTGCCATATGCCTTCATAAGTGGGTATCTGGTGCTGAGCAGTCTCAGTGCTCTACGTCTGGGCAGGCATTTGGCTTCACTAGAAAGAGACACAATTGTTATAACTGCGGGCTCGTCCACTGCCATTCGTGCAGTTCAAGGAAAGCATTAGGAGCAGCACACGCTCCTAATCCTGGCAAGCCGTATCGTGTGTGTGATTCTTGTTATGCAAAATTGAACAAGGTTGTTGAAGCTAGCAATAGTAATAGGAGGAATGCCTTGCCTCCTCTGTCAGGGGAGAACAAGGATAGGCTAGACAAGTCTGACCTAAGATTGTCCAAGGCAGTAATTCCTTCTAACATGGATTTGATAAAGCAGCTAGATACTAAGGCAGCCAAGCAAGGAAACAAAGGTGATACATTCTCACTGCTAAAAGATGTTGTCTTGTCCACTGCTCTTGATCTGAGACGAACAGTTCCAAGACCGGTGGTTGCACCATCAAGAGTAAGTTCCAGATCTGTGTCCCATTTCTCTAAAAGACCAAGCCCCCCTCGTTCAGCTACACCTATTCCAACAACTTCAGGACTTGCCTTCTCAAAAAGTATTTCTGATAGTTTGAAGAAAACAAATGAACTTTTAAATCAAGAAGTGCAGAAGTTGCATGCTCAAGTCAAGAGCCCAAGACAGACATGTGAACTGCAAGAATTAGAGATTCAAAGGTCAACAAAAAAGCCTCAAGAAGCTATGGCACTGTTTGCTGAGGAATCTGCTAAATGTAAAGCTGCAAAAGAAGTTATTAAGTCGCTCACGGTTCAGCTCAAAGACCCGGCTGAGAAGCTTCCTACTGGACCAAATGGCATCCACCATCCAGATTCAAATGGGGAGCAGCACTCCAAAGCTGAGTCAATTAGTGCATCTAGTTTGGCCTCCATGGGACTTGAATATGCTCTATTGAATAAAACTGCAGGGAATTCGCCAGGAACATATGGAACTAATCTTCACCAGCAAATTCGAAGCCCTGTGTCCTCTAATGGGACCAATAATTATCCAGATGTCAAATTGCCTAAT

Predicted protein sequences of Glyma11g28160

Limit To All Plant Sequences

>Glyma11g28160.2   sequence type=predicted peptide   gene model=Glyma11g28160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSELLSVCQERHLFIALMGKKKVFKVTGRVLIAMKNGAQLLKYGRKGKPKFCPFRLSRDESSLIWITSSGERNLKLSSVSRIILGQRTMRFIPLNLIAYNTLTFYICKDKVEAEVWIAGLKALISSGQGGRSKIDGWSDGGLILNSFRPDNTISKKSHVPPDGTNMQVKGSALDVFRVSVSSAPSTSSHGSAPDDYDALGDVYIWGEVTCENVKVGADKNVNYFSPRADVLLPRPLESNVVLDVHHIACGARHASLVTRQGEVFTWGEESGGCRGHGVGKNVVQPRLVEALTYTTVDFVAYGYDASHWIPKRIVSPSEGLQIAFVACGPWYTTLVTSIAQLFTFGDGTFGVLSHGDRQNVSYPREVESLLGLRTIVVTCGVWHTAAVEEIIATHSSTSISSGKLFTWGDGDKNRLGHRDKETRLKPTCTRLPGESIEEIACRAYHVAVLTSKNEVYTWGKGANGRLGHADVEDRKTPALVEALKDRHVKYIACGSNNSAAICLHKWVSGAEQSQCSTSGQAFGFTRKRHNCYNCGLVHCHSCSSRKALGAAHAPNPGKPYRVCDSCYAKLNKVVEASNSNRRNALPPLSGENKDRLDKSDLRLSKAVIPSNMDLIKQLDTKAAKQGNKGDTFSLLKDVVLSTALDLRRTVPRPVVAPSRVSSRSVSHFSKRPSPPRSATPIPTTSGLAFSKSISDSLKKTNELLNQEVQKLHAQVKSPRQTCELQELEIQRSTKKPQEAMALFAEESAKCKAAKEVIKSLTVQLKDPAEKLPTGPNGIHHPDSNGEQHSKAESISASSLASMGLEYALLNKTAGNSPGTYGTNLHQQIRSPVSSNGTNNYPDVKLPN

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