SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G30070 | AT | Annotation by Michelle Graham. TAIR10: potassium transporter 1 | chr2:12835097-12838466 FORWARD LENGTH=712 | SoyBase | E_val: 0 | ISS |
| GO:0006813 | GO-bp | Annotation by Michelle Graham. GO Biological Process: potassium ion transport | SoyBase | N/A | ISS |
| GO:0071805 | GO-bp | Annotation by Michelle Graham. GO Biological Process: potassium ion transmembrane transport | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0015079 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: potassium ion transmembrane transporter activity | SoyBase | N/A | ISS |
| PF02705 | PFAM | K+ potassium transporter | JGI | ISS | |
| UniRef100_G7K729 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Potassium transporter n=1 Tax=Medicago truncatula RepID=G7K729_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233CB41 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233CB41 related cluster n=1 Tax=unknown RepID=UPI000233CB41 | SoyBase | E_val: 0 | ISS |
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Glyma11g27830 not represented in the dataset |
Glyma11g27830 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma18g06790 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g169900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g27830.3 sequence type=transcript gene model=Glyma11g27830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GAAAGAATCCTCACTAATATTCCATTTTAGATGTTACCTGCACTTTCTTTATATATTCCATTTTCTCCAGCATTTTTTTTCCTGAACAACCAATCTGATATCTGGTTTTTCCCCTTCACACCCTCTCTCCTACATCATCACCATGAACCCCTCTGAGCATTCTATGGAACAGGGAGTATCTCAGCAGAATTTCAAGAGGACGTCTTGCACAACTGTGCTTACTCTAGCTTACCAAAGTCTTGGGGTAGTATATGGTGACCTCAGTACTGCCCCTCTTTATGTTTACAAGACCACATTCTCAGGGAAATTGAGCCTCAAGGAAGACGATGAAGAAATTTTTGGGGTGCTTTCATTTATCTTCTGGACATTTACCATTATTGCTCTCTTCAAATATGTTTTCATTGTGATGTCTGCTGATGACAATGGGGAAGGGGGTACCTTTGCATTATACTCACTTCTATGTCGAAATGGCAGACTAAGCATTTTACCAAATCAACAATCCACAGATGAGAAATTGTCTACTTATGGCACAGAAGATTTTGCAGACACCTGGCAGTCTTCAATTTTGAAGTTATTCTTTGAAAAGCACCCGGGGATCCGGAAAGGACTTCTGATCTTTGTCCTGATAGGAACCTGTATGGCAATTGGGGATGGTGTGATTACTCCTTCAATATCAGGTAGTTAATCTGGAGCAGCCCCTGAGCTTCTATAATGATGTTTACTACATGCCTCATTGGTTCCTTTCTTGCTGCAGTTTCAGGCGTTAAAGTTAAAATCAGTGAACTCCATGACAATTATGTTATAATGGTCTCATGTGTCATTTTAGTGGGGCTATTCTCCATTCAGCATCATGGCACACATAGAGTTGCTTTCTTGTTTGCTCCAGTTGTTGCAACATGGCTTTTGTGTATTAGCAGTATTGGTATATACAACATATTCCACTGGAACCCAAAAGTATACCGTGCACTTTCTCCAATCTACATGGCGAAGTTCATCAAAACAACTGGGATTGAAGGATGGTTGTCATTAGGAGGAGTGGTGCTTTCAATCACAGGTGTGGAGACCATGTTTTCTAACTTGGGACATTTTTCTGCTCTCACAATAAAGATAGCTTTCACATGTCTAGTATATCCCTGCCTAATTCTGGCATATATGGGTGAGGCTGCATTCCTCTCTAGGCATCATGAAGACATTCAAAGAAGTTTCTACAAAGCCATACCAGAAGCTGTGTTTTGGCCAGTGTTCATAGTGGCAACTTTTGCAGCCATTTTAAGAAGTCAAGCAGTAATTTCTGCTACCTTTTCCATCATAAGCCAGTGCCATGCATTAAATTGTTTTCCTTCAGTGAAGATTATTCATACTTCAACCAGAATATATGGGCAGATATACATCCCAGAAGTCAATTGGATATTGATGTGCTTTTGTTTAGCTATCACATTTGGCCTAAGGGACACTAACATGATAGGTCATGCATATGGGCTGGCAGTGACCACTGTTATGTTTGTTACAACATGCTTGATGACACTAGTAATTCTGATTGTCTGGAAGCAAGGAATAATAAAAGCCCTTACATGTTTGCTATTGTTTGGATCAATTGAACTTCTTTACATCTCAGCTTGTATCTGCAAGGTCCCTGAAGGAGGGTGGATTTCACTTGTGCTATGCTTTATCTTTATGTGTATAATGTACACCTGGAACTATGGAACAATGATGAAACACCAATTTGATGTGGAAAACAAGGTTTCAATGAATAGGATGCTATCTATGGGACCTTCACTCGGTATGGTTCGTGTACCGGGAGTAGGACTCATGTACTCTAATCTGGCTTCTGGTTTCCCTGCTATGTTTGGTCACTTTGTTACAAACTTGCCAGCATTCCATGAGGTGCTAGTTTTTGTCTGTGTCAAATCTGTTCAAGTCCCTCATGTGAGTGAAACCGAACGATTGCTCATCAGTAGGGTCAATTCGAAGGAGCTTGGCATGTTTCATTGCATTGTCAGGTATGGTTACAAGGACATTCAGCAGGAGAAATATAATTTTGAGAACAAGTTGATATCTTCTATAGTACAATTTGTGGAATCAGAGGAGGAAAGCATAGAAGAACCAACACATGAATTGTCTGCAAATGATGAAAACTCAAATGTGGAAGACCATGGTGTTTCTCTTTCACAAAACACATTTGATAAGTCATGCTGTGAAGAGAACTTACTCCCATCTTCACGTGCTTTGCTGGTAATGATGAATGGTGATAACCATCCAGAAAAGTGTTTCTACGAAGATGAGTCTCTGCAGATTATGAAAGCTAAAGAGTTTGGTGTTACCTATATACTAGGTCATTCCCTTGAAAAGGCAAAGAACTCATCTTCCATCCTAAAGAAATTTGCTATAGATGTTGTTTTTGGATTTCTAAGCAAGAATTGCAGAGAGTCTGATGCTGTTCTGGATGTTCCTCACACTTCTTTGCTAGAGGTTGGCATGACATACTATGTCTAATTTTTTAGAGGCATCTGCTCAGAAGAGAATAGTCAGAGTTAAATGTTGGTTTAAAAGAGTGACACTGACAATGACCTCCAGAGGCCAATCAATGGTCAAGATTAATCAGAGGTAGATTTGTAATCATTGATCTCTAGGTCTCCATATTTCTGTATCAAATAATGTAATTAAAAAGAAAAACTGTTTCACACAAGAGAATAGATTACACTGACAAATTTGCTTATAAAAATA
>Glyma11g27830.2 sequence type=CDS gene model=Glyma11g27830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAACCCCTCTGAGCATTCTATGGAACAGGGAGTATCTCAGCAGAATTTCAAGAGGACGTCTTGCACAACTGTGCTTACTCTAGCTTACCAAAGTCTTGGGGTAGTATATGGTGACCTCAGTACTGCCCCTCTTTATGTTTACAAGACCACATTCTCAGGGAAATTGAGCCTCAAGGAAGACGATGAAGAAATTTTTGGGGTGCTTTCATTTATCTTCTGGACATTTACCATTATTGCTCTCTTCAAATATGTTTTCATTGTGATGTCTGCTGATGACAATGGGGAAGGGGGTACCTTTGCATTATACTCACTTCTATGTCGAAATGGCAGACTAAGCATTTTACCAAATCAACAATCCACAGATGAGAAATTGTCTACTTATGGCACAGAAGATTTTGCAGACACCTGGCAGTCTTCAATTTTGAAGTTATTCTTTGAAAAGCACCCGGGGATCCGGAAAGGACTTCTGATCTTTGTCCTGATAGGAACCTGTATGGCAATTGGGGATGGTGTGATTACTCCTTCAATATCAGTTCTTGCTGCAGTTTCAGGCGTTAAAGTTAAAATCAGTGAACTCCATGACAATTATGTTATAATGGTCTCATGTGTCATTTTAGTGGGGCTATTCTCCATTCAGCATCATGGCACACATAGAGTTGCTTTCTTGTTTGCTCCAGTTGTTGCAACATGGCTTTTGTGTATTAGCAGTATTGGTATATACAACATATTCCACTGGAACCCAAAAGTATACCGTGCACTTTCTCCAATCTACATGGCGAAGTTCATCAAAACAACTGGGATTGAAGGATGGTTGTCATTAGGAGGAGTGGTGCTTTCAATCACAGGTGTGGAGACCATGTTTTCTAACTTGGGACATTTTTCTGCTCTCACAATAAAGATAGCTTTCACATGTCTAGTATATCCCTGCCTAATTCTGGCATATATGGGTGAGGCTGCATTCCTCTCTAGGCATCATGAAGACATTCAAAGAAGTTTCTACAAAGCCATACCAGAAGCTGTGTTTTGGCCAGTGTTCATAGTGGCAACTTTTGCAGCCATTTTAAGAAGTCAAGCAGTAATTTCTGCTACCTTTTCCATCATAAGCCAGTGCCATGCATTAAATTGTTTTCCTTCAGTGAAGATTATTCATACTTCAACCAGAATATATGGGCAGATATACATCCCAGAAGTCAATTGGATATTGATGTGCTTTTGTTTAGCTATCACATTTGGCCTAAGGGACACTAACATGATAGGTCATGCATATGGGCTGGCAGTGACCACTGTTATGTTTGTTACAACATGCTTGATGACACTAGTAATTCTGATTGTCTGGAAGCAAGGAATAATAAAAGCCCTTACATGTTTGCTATTGTTTGGATCAATTGAACTTCTTTACATCTCAGCTTGTATCTGCAAGGTCCCTGAAGGAGGGTGGATTTCACTTGTGCTATGCTTTATCTTTATGTGTATAATGTACACCTGGAACTATGGAACAATGATGAAACACCAATTTGATGTGGAAAACAAGGTTTCAATGAATAGGATGCTATCTATGGGACCTTCACTCGGTATGGTTCGTGTACCGGGAGTAGGACTCATGTACTCTAATCTGGCTTCTGGTTTCCCTGCTATGTTTGGTCACTTTGTTACAAACTTGCCAGCATTCCATGAGGTGCTAGTTTTTGTCTGTGTCAAATCTGTTCAAGTCCCTCATGTGAGTGAAACCGAACGATTGCTCATCAGTAGGGTCAATTCGAAGGAGCTTGGCATGTTTCATTGCATTGTCAGGTATGGTTACAAGGACATTCAGCAGGAGAAATATAATTTTGAGAACAAGTTGATATCTTCTATAGTACAATTTGTGGAATCAGAGGAGGAAAGCATAGAAGAACCAACACATGAATTGTCTGCAAATGATGAAAACTCAAATGTGGAAGACCATGGTGTTTCTCTTTCACAAAACACATTTGATAAGTCATGCTGTGAAGAGAACTTACTCCCATCTTCACGTGCTTTGCTGGTAATGATGAATGGTGATAACCATCCAGAAAAGTGTTTCTACGAAGATGAGTCTCTGCAGATTATGAAAGCTAAAGAGTTTGGTGTTACCTATATACTAGGTCATTCCCTTGAAAAGGCAAAGAACTCATCTTCCATCCTAAAGAAATTTGCTATAGATGTTGTTTTTGGATTTCTAAGCAAGAATTGCAGAGAGTCTGATGCTGTTCTGGATGTTCCTCACACTTCTTTGCTAGAGGTTGGCATGACATACTATGTCTAA >Glyma11g27830.3 sequence type=CDS gene model=Glyma11g27830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATGTTTACTACATGCCTCATTGGTTCCTTTCTTGCTGCAGTTTCAGGCGTTAAAGTTAAAATCAGTGAACTCCATGACAATTATGTTATAATGGTCTCATGTGTCATTTTAGTGGGGCTATTCTCCATTCAGCATCATGGCACACATAGAGTTGCTTTCTTGTTTGCTCCAGTTGTTGCAACATGGCTTTTGTGTATTAGCAGTATTGGTATATACAACATATTCCACTGGAACCCAAAAGTATACCGTGCACTTTCTCCAATCTACATGGCGAAGTTCATCAAAACAACTGGGATTGAAGGATGGTTGTCATTAGGAGGAGTGGTGCTTTCAATCACAGGTGTGGAGACCATGTTTTCTAACTTGGGACATTTTTCTGCTCTCACAATAAAGATAGCTTTCACATGTCTAGTATATCCCTGCCTAATTCTGGCATATATGGGTGAGGCTGCATTCCTCTCTAGGCATCATGAAGACATTCAAAGAAGTTTCTACAAAGCCATACCAGAAGCTGTGTTTTGGCCAGTGTTCATAGTGGCAACTTTTGCAGCCATTTTAAGAAGTCAAGCAGTAATTTCTGCTACCTTTTCCATCATAAGCCAGTGCCATGCATTAAATTGTTTTCCTTCAGTGAAGATTATTCATACTTCAACCAGAATATATGGGCAGATATACATCCCAGAAGTCAATTGGATATTGATGTGCTTTTGTTTAGCTATCACATTTGGCCTAAGGGACACTAACATGATAGGTCATGCATATGGGCTGGCAGTGACCACTGTTATGTTTGTTACAACATGCTTGATGACACTAGTAATTCTGATTGTCTGGAAGCAAGGAATAATAAAAGCCCTTACATGTTTGCTATTGTTTGGATCAATTGAACTTCTTTACATCTCAGCTTGTATCTGCAAGGTCCCTGAAGGAGGGTGGATTTCACTTGTGCTATGCTTTATCTTTATGTGTATAATGTACACCTGGAACTATGGAACAATGATGAAACACCAATTTGATGTGGAAAACAAGGTTTCAATGAATAGGATGCTATCTATGGGACCTTCACTCGGTATGGTTCGTGTACCGGGAGTAGGACTCATGTACTCTAATCTGGCTTCTGGTTTCCCTGCTATGTTTGGTCACTTTGTTACAAACTTGCCAGCATTCCATGAGGTGCTAGTTTTTGTCTGTGTCAAATCTGTTCAAGTCCCTCATGTGAGTGAAACCGAACGATTGCTCATCAGTAGGGTCAATTCGAAGGAGCTTGGCATGTTTCATTGCATTGTCAGGTATGGTTACAAGGACATTCAGCAGGAGAAATATAATTTTGAGAACAAGTTGATATCTTCTATAGTACAATTTGTGGAATCAGAGGAGGAAAGCATAGAAGAACCAACACATGAATTGTCTGCAAATGATGAAAACTCAAATGTGGAAGACCATGGTGTTTCTCTTTCACAAAACACATTTGATAAGTCATGCTGTGAAGAGAACTTACTCCCATCTTCACGTGCTTTGCTGGTAATGATGAATGGTGATAACCATCCAGAAAAGTGTTTCTACGAAGATGAGTCTCTGCAGATTATGAAAGCTAAAGAGTTTGGTGTTACCTATATACTAGGTCATTCCCTTGAAAAGGCAAAGAACTCATCTTCCATCCTAAAGAAATTTGCTATAGATGTTGTTTTTGGATTTCTAAGCAAGAATTGCAGAGAGTCTGATGCTGTTCTGGATGTTCCTCACACTTCTTTGCTAGAGGTTGGCATGACATACTATGTCTAA
>Glyma11g27830.2 sequence type=predicted peptide gene model=Glyma11g27830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNPSEHSMEQGVSQQNFKRTSCTTVLTLAYQSLGVVYGDLSTAPLYVYKTTFSGKLSLKEDDEEIFGVLSFIFWTFTIIALFKYVFIVMSADDNGEGGTFALYSLLCRNGRLSILPNQQSTDEKLSTYGTEDFADTWQSSILKLFFEKHPGIRKGLLIFVLIGTCMAIGDGVITPSISVLAAVSGVKVKISELHDNYVIMVSCVILVGLFSIQHHGTHRVAFLFAPVVATWLLCISSIGIYNIFHWNPKVYRALSPIYMAKFIKTTGIEGWLSLGGVVLSITGVETMFSNLGHFSALTIKIAFTCLVYPCLILAYMGEAAFLSRHHEDIQRSFYKAIPEAVFWPVFIVATFAAILRSQAVISATFSIISQCHALNCFPSVKIIHTSTRIYGQIYIPEVNWILMCFCLAITFGLRDTNMIGHAYGLAVTTVMFVTTCLMTLVILIVWKQGIIKALTCLLLFGSIELLYISACICKVPEGGWISLVLCFIFMCIMYTWNYGTMMKHQFDVENKVSMNRMLSMGPSLGMVRVPGVGLMYSNLASGFPAMFGHFVTNLPAFHEVLVFVCVKSVQVPHVSETERLLISRVNSKELGMFHCIVRYGYKDIQQEKYNFENKLISSIVQFVESEEESIEEPTHELSANDENSNVEDHGVSLSQNTFDKSCCEENLLPSSRALLVMMNGDNHPEKCFYEDESLQIMKAKEFGVTYILGHSLEKAKNSSSILKKFAIDVVFGFLSKNCRESDAVLDVPHTSLLEVGMTYYV* >Glyma11g27830.3 sequence type=predicted peptide gene model=Glyma11g27830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MMFTTCLIGSFLAAVSGVKVKISELHDNYVIMVSCVILVGLFSIQHHGTHRVAFLFAPVVATWLLCISSIGIYNIFHWNPKVYRALSPIYMAKFIKTTGIEGWLSLGGVVLSITGVETMFSNLGHFSALTIKIAFTCLVYPCLILAYMGEAAFLSRHHEDIQRSFYKAIPEAVFWPVFIVATFAAILRSQAVISATFSIISQCHALNCFPSVKIIHTSTRIYGQIYIPEVNWILMCFCLAITFGLRDTNMIGHAYGLAVTTVMFVTTCLMTLVILIVWKQGIIKALTCLLLFGSIELLYISACICKVPEGGWISLVLCFIFMCIMYTWNYGTMMKHQFDVENKVSMNRMLSMGPSLGMVRVPGVGLMYSNLASGFPAMFGHFVTNLPAFHEVLVFVCVKSVQVPHVSETERLLISRVNSKELGMFHCIVRYGYKDIQQEKYNFENKLISSIVQFVESEEESIEEPTHELSANDENSNVEDHGVSLSQNTFDKSCCEENLLPSSRALLVMMNGDNHPEKCFYEDESLQIMKAKEFGVTYILGHSLEKAKNSSSILKKFAIDVVFGFLSKNCRESDAVLDVPHTSLLEVGMTYYV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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