Glyma11g27820 - SoyBase

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Report for Sequence Feature Glyma11g27820

Feature Type:	gene_model
Chromosome:	Gm11
Start:	27710401
stop:	27712052
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g27820

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G30040	AT	Annotation by Michelle Graham. TAIR10: mitogen-activated protein kinase kinase kinase 14 \| chr2:12821747-12823138 FORWARD LENGTH=463	SoyBase	E_val: 2.00E-116	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0009658	GO-bp	Annotation by Michelle Graham. GO Biological Process: chloroplast organization	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0009738	GO-bp	Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0009753	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus	SoyBase	N/A	ISS
GO:0009873	GO-bp	Annotation by Michelle Graham. GO Biological Process: ethylene mediated signaling pathway	SoyBase	N/A	ISS
GO:0010200	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to chitin	SoyBase	N/A	ISS
GO:0035556	GO-bp	Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction	SoyBase	N/A	ISS
GO:0045893	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0046777	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG0198	KOG	MEKK and related serine/threonine protein kinases	JGI		ISS
PTHR24361	Panther	MITOGEN-ACTIVATED KINASE KINASE KINASE	JGI		ISS
PTHR24361:SF207	Panther	SERINE/THREONINE-PROTEIN KINASE 24	JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
UniRef100_G7JZL6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Serine/threonine protein kinase n=1 Tax=Medicago truncatula RepID=G7JZL6_MEDTR	SoyBase	E_val: 3.00E-130	ISS
UniRef100_I1LLN0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1LLN0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma11g27820

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g27820

Paralog	Evidence	Comments
Glyma18g06800	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g27820 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g170000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g27820

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma11g27820

Limit To All Plant Sequences

>Glyma11g27820.2   sequence type=CDS   gene model=Glyma11g27820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTCTTCTTGGATAAGAGGGAAGTGCGTTGGTAAGGGCGCGTTTGGCACTGTCAGTGTCGCGCTTCGCAAACGTGACGATCAAACTCAAATTTTCGCGGTGAAGTCCGTGGATTTAAAAACGGGTCTCCCGGGTCAGCTGGAGGCGTTGGAGAACGAGATTCGGATCCTCCAGCGCATGTCTTCTCCGCACGTGGTAACTTTTCTCGGCGACGACGCCACGTGCGAGCAGCGGAACCTTCATATGGAGTACATGCCAGGTGGCACGCTCGCTGACCTGGATGCTGACGTGGACGAGATTTTAGTGAGACACTACACGTGGTGCCTTGTGAGCGCTCTGAAGCACTTGCACGCAAACGGCGTCGTTCACTGCGACGTGAAGGGAAAGAACGTTCTCGTCGGAGACGGAGGGAAAGGTTTCAATTGCAAGCTCGCTGACTTCGGATCGGCGGCGGAGTTCTCCAACGAAGGGTTTCCGGCAGTGGTGCCGCGCGGGAGTCCGCTGTGGATGGCGCCGGAGGTGGTTCGCCGGGAGTTGCAAGGTCCGGCGTCGGATGTTTGGTCGTTGGGATGCACGGTGATCGAGATGATCACCGGAAAACCGCCGTTGGAGGGGAACATCGTGGACACGCTGAACCGGATCGGGTTCTCCGGCGAGGTGCCGGAGTTTCCGAGGCGGTTGTCGGAGCTCGGAAGGGATTTTCTCGAGAAGTGTTTGAGAAGGGAAGCGTGGCGGCGGTGGAGCTGCGATCAGCTGCTGCAGCATCCGTTTTTGTTGCCGTGTGGTGAGATTGCGGAATCGTCGCCGCGGTGTGTTCTCGACCGAGTTGACTCGGAGTTCGCCGAGTTCGACCACGACGAAGAAGAAGAAGAAGAAACAATAACTGAAAATGAAAACTGGGCGAGGGGTAGAATTGGAAAATTGGCGATCAGGGAAATGGTAAATTGGGAAACAGAAGGTTGGGTGGTGGTGAGGGAATTGGCTTCCGACGCGGAACCGGCGGTGGCAGTTGACAGTTCTGAAGAAGTTAAAGACTTGACATGCCCGCGAAATATTCGGAAAGAGAGGGTAGAAAGGGGAATTCATTTAGGGACAAATTCGGAATTTAAAAATATAGAAAACGAAAGGGTAAAAATGAAAATGTGGGATTTGGGTGGGAGGGGGTGGTTGGTGCAGTGCAACTGCAATCACAGGGAGAGTGAAGCTAGTTGGAGGTGTCAGTGTGTGTGGAAAAATGTTGATAAGAAAAAAGGAATAATAATGAAAATGAATATTTACAGGTTGTACTGTAAATTATTGAAATCACGTTGTTTGTTCTTGGAGTATCTAAATACATATTTATGTTTTTGGGCTATTTATGTTGATTACTTTTTATGA

Predicted protein sequences of Glyma11g27820

Limit To All Plant Sequences

>Glyma11g27820.2   sequence type=predicted peptide   gene model=Glyma11g27820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSSWIRGKCVGKGAFGTVSVALRKRDDQTQIFAVKSVDLKTGLPGQLEALENEIRILQRMSSPHVVTFLGDDATCEQRNLHMEYMPGGTLADLDADVDEILVRHYTWCLVSALKHLHANGVVHCDVKGKNVLVGDGGKGFNCKLADFGSAAEFSNEGFPAVVPRGSPLWMAPEVVRRELQGPASDVWSLGCTVIEMITGKPPLEGNIVDTLNRIGFSGEVPEFPRRLSELGRDFLEKCLRREAWRRWSCDQLLQHPFLLPCGEIAESSPRCVLDRVDSEFAEFDHDEEEEEETITENENWARGRIGKLAIREMVNWETEGWVVVRELASDAEPAVAVDSSEEVKDLTCPRNIRKERVERGIHLGTNSEFKNIENERVKMKMWDLGGRGWLVQCNCNHRESEASWRCQCVWKNVDKKKGIIMKMNIYRLYCKLLKSRCLFLEYLNTYLCFWAIYVDYFL*

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