Glyma11g27760 - SoyBase

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Report for Sequence Feature Glyma11g27760

Feature Type:	gene_model
Chromosome:	Gm11
Start:	27633252
stop:	27634264
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g27760

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G23460	AT	Annotation by Michelle Graham. TAIR10: Adaptin family protein \| chr4:12243899-12248898 REVERSE LENGTH=893	SoyBase	E_val: 2.00E-69	ISS
GO:0006886	GO-bp	Annotation by Michelle Graham. GO Biological Process: intracellular protein transport	SoyBase	N/A	ISS
GO:0015031	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein transport	SoyBase	N/A	ISS
GO:0016192	GO-bp	Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0030117	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane coat	SoyBase	N/A	ISS
GO:0030131	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: clathrin adaptor complex	SoyBase	N/A	ISS
GO:0008565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein transporter activity	SoyBase	N/A	ISS
GO:0030276	GO-mf	Annotation by Michelle Graham. GO Molecular Function: clathrin binding	SoyBase	N/A	ISS
PTHR11134	Panther	ADAPTER-RELATED PROTEIN COMPLEX, BETA SUBUNIT	JGI		ISS
PTHR11134:SF3	Panther	ADAPTER-RELATED PROTEIN COMPLEX 1, BETA SUBUNIT	JGI		ISS
PF01602	PFAM	Adaptin N terminal region	JGI		ISS
UniRef100_D7TV41	UniRef	Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Vitis vinifera RepID=D7TV41_VITVI	SoyBase	E_val: 1.00E-74	ISS
UniRef100_G7JQK3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AP-2 complex subunit beta n=1 Tax=Medicago truncatula RepID=G7JQK3_MEDTR	SoyBase	E_val: 1.00E-70	ISS

Expression Patterns of Glyma11g27760

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma11g27760 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma11g27760

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma11g27760

Limit To All Plant Sequences

>Glyma11g27760.1   sequence type=CDS   gene model=Glyma11g27760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAAGGTTTAATATTTACTGACTCATATGCATGGACACACACAGGAAAACCATTGTGTTATGTTGCAGCTCTTTATGTTGCCAAACTTTATGACATAAATGCAGAGTTAGTTGAGGACAAGGGATTTTTGGAATCCTTGAAGGATTTGATATCTGATAATAATCCAATGATGGTCGCTAATGTTGTGGCAACACTTGTCGATGATCAGGAAAATAGTTGTAGTCCCATCTTTGAGATCCCCAGTCACACACTGTCCAAGCTCCTTACTGCTTTAAATGAATGTACAGAATGCAAGGCAGTTGATGGTCGTGAGACTGAAAAAATAGTAGAAAGAGCTACTCCTCGCTTTCAACATGCCAATTGTGCAGTTGTTCTATCAGTTGTTAAGCTTATCACCAGTACTGATGTGGTTCAGAATCTTTGCAAAAAGATGGCCCCTCCTATTGTGACATTGCTCTCTGCAGAACCTAAGATACAATATGTAGCATTATGGAATATCAATCTTATAGTTCAAAGAAGACCAACAATACTTGCTCATGAATTTAATGCACTGTTGCAGGCTTTAATATGTGGAATTGGTTACCTTGAGCAGCCAGTTTTAACATGA

Predicted protein sequences of Glyma11g27760

Limit To All Plant Sequences

>Glyma11g27760.1   sequence type=predicted peptide   gene model=Glyma11g27760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
QGLIFTDSYAWTHTGKPLCYVAALYVAKLYDINAELVEDKGFLESLKDLISDNNPMMVANVVATLVDDQENSCSPIFEIPSHTLSKLLTALNECTECKAVDGRETEKIVERATPRFQHANCAVVLSVVKLITSTDVVQNLCKKMAPPIVTLLSAEPKIQYVALWNINLIVQRRPTILAHEFNALLQALICGIGYLEQPVLT*

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