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Integrating Genetics and Genomics to Advance Soybean Research


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Report for Sequence Feature Glyma11g27760

Feature Type:gene_model
Chromosome:Gm11
Start:27633252
stop:27634264
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma11g27760
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G23460AT Annotation by Michelle Graham. TAIR10: Adaptin family protein | chr4:12243899-12248898 REVERSE LENGTH=893 SoyBaseE_val: 2.00E-69ISS
GO:0006886GO-bp Annotation by Michelle Graham. GO Biological Process: intracellular protein transport SoyBaseN/AISS
GO:0015031GO-bp Annotation by Michelle Graham. GO Biological Process: protein transport SoyBaseN/AISS
GO:0016192GO-bp Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0030117GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane coat SoyBaseN/AISS
GO:0030131GO-cc Annotation by Michelle Graham. GO Cellular Compartment: clathrin adaptor complex SoyBaseN/AISS
GO:0008565GO-mf Annotation by Michelle Graham. GO Molecular Function: protein transporter activity SoyBaseN/AISS
GO:0030276GO-mf Annotation by Michelle Graham. GO Molecular Function: clathrin binding SoyBaseN/AISS
PTHR11134Panther ADAPTER-RELATED PROTEIN COMPLEX, BETA SUBUNIT JGI ISS
PTHR11134:SF3Panther ADAPTER-RELATED PROTEIN COMPLEX 1, BETA SUBUNIT JGI ISS
PF01602PFAM Adaptin N terminal region JGI ISS
UniRef100_D7TV41UniRef Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Vitis vinifera RepID=D7TV41_VITVI SoyBaseE_val: 1.00E-74ISS
UniRef100_G7JQK3UniRef Annotation by Michelle Graham. Most informative UniRef hit: AP-2 complex subunit beta n=1 Tax=Medicago truncatula RepID=G7JQK3_MEDTR SoyBaseE_val: 1.00E-70ISS

Expression Patterns of Glyma11g27760
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g27760 not represented in the dataset
Glyma11g27760 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma11g27760 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma11g27760
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma11g27760
>Glyma11g27760.1   sequence type=CDS   gene model=Glyma11g27760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAAGGTTTAATATTTACTGACTCATATGCATGGACACACACAGGAAAACCATTGTGTTATGTTGCAGCTCTTTATGTTGCCAAACTTTATGACATAAATGCAGAGTTAGTTGAGGACAAGGGATTTTTGGAATCCTTGAAGGATTTGATATCTGATAATAATCCAATGATGGTCGCTAATGTTGTGGCAACACTTGTCGATGATCAGGAAAATAGTTGTAGTCCCATCTTTGAGATCCCCAGTCACACACTGTCCAAGCTCCTTACTGCTTTAAATGAATGTACAGAATGCAAGGCAGTTGATGGTCGTGAGACTGAAAAAATAGTAGAAAGAGCTACTCCTCGCTTTCAACATGCCAATTGTGCAGTTGTTCTATCAGTTGTTAAGCTTATCACCAGTACTGATGTGGTTCAGAATCTTTGCAAAAAGATGGCCCCTCCTATTGTGACATTGCTCTCTGCAGAACCTAAGATACAATATGTAGCATTATGGAATATCAATCTTATAGTTCAAAGAAGACCAACAATACTTGCTCATGAATTTAATGCACTGTTGCAGGCTTTAATATGTGGAATTGGTTACCTTGAGCAGCCAGTTTTAACATGA
Predicted protein sequences of Glyma11g27760
>Glyma11g27760.1   sequence type=predicted peptide   gene model=Glyma11g27760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
QGLIFTDSYAWTHTGKPLCYVAALYVAKLYDINAELVEDKGFLESLKDLISDNNPMMVANVVATLVDDQENSCSPIFEIPSHTLSKLLTALNECTECKAVDGRETEKIVERATPRFQHANCAVVLSVVKLITSTDVVQNLCKKMAPPIVTLLSAEPKIQYVALWNINLIVQRRPTILAHEFNALLQALICGIGYLEQPVLT*






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