Glyma11g27720 - SoyBase

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Report for Sequence Feature Glyma11g27720

Feature Type:	gene_model
Chromosome:	Gm11
Start:	27568616
stop:	27573491
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g27720

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G47340	AT	Annotation by Michelle Graham. TAIR10: glutamine-dependent asparagine synthase 1 \| chr3:17438136-17441043 REVERSE LENGTH=584	SoyBase	E_val: 0	ISS
GO:0006529	GO-bp	Annotation by Michelle Graham. GO Biological Process: asparagine biosynthetic process	SoyBase	N/A	ISS
GO:0009063	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular amino acid catabolic process	SoyBase	N/A	ISS
GO:0009416	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to light stimulus	SoyBase	N/A	ISS
GO:0009646	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to absence of light	SoyBase	N/A	ISS
GO:0009744	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus	SoyBase	N/A	ISS
GO:0009749	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to glucose stimulus	SoyBase	N/A	ISS
GO:0009750	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to fructose stimulus	SoyBase	N/A	ISS
GO:0043617	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to sucrose starvation	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0004066	GO-mf	Annotation by Michelle Graham. GO Molecular Function: asparagine synthase (glutamine-hydrolyzing) activity	SoyBase	N/A	ISS
KOG0571	KOG	Asparagine synthase (glutamine-hydrolyzing)	JGI		ISS
PTHR11772	Panther	ASPARAGINE SYNTHETASE	JGI		ISS
PF00733	PFAM	Asparagine synthase	JGI		ISS
UniRef100_I1LLM7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Asparagine synthetase n=1 Tax=Glycine max RepID=I1LLM7_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1LLM7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Asparagine synthetase n=1 Tax=Glycine max RepID=I1LLM7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma11g27720

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g27720

Paralog	Evidence	Comments
Glyma18g06840	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g27720 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g170300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g27720

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma11g27720

Limit To All Plant Sequences

>Glyma11g27720.1   sequence type=CDS   gene model=Glyma11g27720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGTGGCATACTTGCTGTGCTTGGTTGCTCTGATTCATCTCAAGCCAAAAGGGTTCGCGTCCTTGAGCTTTCTCGCAGATTGAAGCACCGTGGTCCTGACTGGAGTGGGCTCCACCAATATGGTGATAACTATTTGGCTCATCAAAGGTTAGCCATAGTTGATCCAGCGTCTGGTGATCAACCCCTCTTCAATGAAGACAAAACTGTAGTGGTTACGGTGAATGGAGAGATCTACAATCATGAAGAACTCAGGAAACAGTTGCCTAATCACACCTTCCGTACAGGAAGTGACTGTGATGTTATTGCTCACCTGTATGAGGAGCACGGAGAAAACTTTGTGGACATGCTTGATGGTATATTTTCGTTTGTTCTGCTAGATACTCGTGACAACAGTTTTATAGTGGCACGAGATGCAATTGGGGTCACTTCCTTGTACATTGGTTGGGGTCTAGATGGCTCTGTCTGGATTTCATCAGAATTGAAGGGGTTGAATGATGATTGCGAACATTTTGAGTCTTTTCCACCTGGTCACTTGTACTCTAGCAAAGAGAGAGCGTTTCGCAGATGGTACAATCCTCCATGGTTCTCTGAGGCTATTCCCTCAGCACCTTATGATCCTCTTGCTTTGAGGCATGCCTTTGAGAAGGCTGTGGTAAAAAGGTTGATGACTGATGTTCCCTTTGGTGTTTTGCTCTCTGGAGGTTTGGACTCTTCATTGGTTGCAGCCGTCACGGCTCGCTACCTGGCAGGCACAAATGCTGCCAAGCAATGGGGAACCAAATTACACTCTTTCTGTGTAGGCCTTGAGGGTGCACCTGACCTAAAGGCAGCAAAGGAAGTAGCAGACTACATAGGTACTGTACATCATGAATTTCACTACACTGTTCAGGATGGCATAGATGCCATTGAGGATGTGATCTATCACATTGAAACATATGATGTGACAACAATTAGAGCAAGCATTCCCATGTTTCTTATGTCTCGTAAGATCAAGTCATTGGGAGTCAAATGGGTTATATCTGGAGAAGGATCTGATGAGATCTTTGGAGGGTATCTATATTTCCACAAGGCACCAAACAAAGAAGAATTTCATCAAGAAACATGCCGCAAGATTAAAGCACTCCACAAATATGATTGCTTGCGAGCCAATAAATCGACCTTTGCCTGGGGTCTAGAAGCCAGAGTGCCATTTTTGGACAAAGATTTTATCAGAGTTGCAATGAACATTGATCCTGAGTATAAAATGATTAAAAAGGAAGAAGGGCGAATTGAGAAATGGGTACTGAGGAGGGCCTTTGATGATGAAGAACATCCTTATCTGCCAAAGCACATTTTATACAGGCAGAAAGAACAATTCAGTGATGGAGTTGGCTATGGTTGGATTGATGGCCTTAAAGCTCATGCTGAGAAACATGTGACTGATAGAATGATGCTCAATGCTGCTAACATTTTCCCCTTCAACACACCAACCACCAAAGAAGCATACTACTATAGAATGATATTTGAGAGGTTCTTCCCTCAGAACTCAGCCAGGCTGAGTGTTCCTGGAGGACCAAGTGTTGCATGTAGCACAGCCAAAGCTGTTGAGTGGGATGCTGCTTGGTCTAACAACCTTGATCCATCTGGTAGAGCAGCACTTGGAGTGCATGCATCAGCTTATGGAAATCAGGTCAAAGCTGTAGAACCAGAGAAGATCATACCAAAGATGGAAGTTTCTCCACTAGGAGTTGCCATATAG

Predicted protein sequences of Glyma11g27720

Limit To All Plant Sequences

>Glyma11g27720.1   sequence type=predicted peptide   gene model=Glyma11g27720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MCGILAVLGCSDSSQAKRVRVLELSRRLKHRGPDWSGLHQYGDNYLAHQRLAIVDPASGDQPLFNEDKTVVVTVNGEIYNHEELRKQLPNHTFRTGSDCDVIAHLYEEHGENFVDMLDGIFSFVLLDTRDNSFIVARDAIGVTSLYIGWGLDGSVWISSELKGLNDDCEHFESFPPGHLYSSKERAFRRWYNPPWFSEAIPSAPYDPLALRHAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVTARYLAGTNAAKQWGTKLHSFCVGLEGAPDLKAAKEVADYIGTVHHEFHYTVQDGIDAIEDVIYHIETYDVTTIRASIPMFLMSRKIKSLGVKWVISGEGSDEIFGGYLYFHKAPNKEEFHQETCRKIKALHKYDCLRANKSTFAWGLEARVPFLDKDFIRVAMNIDPEYKMIKKEEGRIEKWVLRRAFDDEEHPYLPKHILYRQKEQFSDGVGYGWIDGLKAHAEKHVTDRMMLNAANIFPFNTPTTKEAYYYRMIFERFFPQNSARLSVPGGPSVACSTAKAVEWDAAWSNNLDPSGRAALGVHASAYGNQVKAVEPEKIIPKMEVSPLGVAI*

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