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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G47340 | AT | Annotation by Michelle Graham. TAIR10: glutamine-dependent asparagine synthase 1 | chr3:17438136-17441043 REVERSE LENGTH=584 | SoyBase | E_val: 0 | ISS |
| GO:0006529 | GO-bp | Annotation by Michelle Graham. GO Biological Process: asparagine biosynthetic process | SoyBase | N/A | ISS |
| GO:0009063 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular amino acid catabolic process | SoyBase | N/A | ISS |
| GO:0009416 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to light stimulus | SoyBase | N/A | ISS |
| GO:0009646 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to absence of light | SoyBase | N/A | ISS |
| GO:0009744 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus | SoyBase | N/A | ISS |
| GO:0009749 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to glucose stimulus | SoyBase | N/A | ISS |
| GO:0009750 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to fructose stimulus | SoyBase | N/A | ISS |
| GO:0043617 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to sucrose starvation | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0004066 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: asparagine synthase (glutamine-hydrolyzing) activity | SoyBase | N/A | ISS |
| KOG0571 | KOG | Asparagine synthase (glutamine-hydrolyzing) | JGI | ISS | |
| PTHR11772 | Panther | ASPARAGINE SYNTHETASE | JGI | ISS | |
| PF00733 | PFAM | Asparagine synthase | JGI | ISS | |
| UniRef100_I1LLM2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Asparagine synthetase n=1 Tax=Glycine max RepID=I1LLM2_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LLM2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Asparagine synthetase n=1 Tax=Glycine max RepID=I1LLM2_SOYBN | SoyBase | E_val: 0 | ISS |
| Locus | Gene Symbol | Protein Name |
|---|---|---|
| DIN1 | asparagine |
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Glyma11g27480 not represented in the dataset |
Glyma11g27480 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g171400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g27480.1 sequence type=CDS gene model=Glyma11g27480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTGTGGCATACTTGCTGTGCTTGGTTGCTCTGATTCATCTCAAGCCAAAAGGGTTCGCGTCCTTGAGCTTTCTCGCAGATTGAAGCACCGTGGTCCTGACTGGAGTGGGCTCCACCAATATGGTGATAACTATTTGGCTCATCAAAGGTTAGCCATAGTTGATCCAGCTTCTGGTGATCAACCCCTCTTCAATGAAGACAAAACTGTCGTGGTTACGGTGAATGGAGAGATCTACAATCATGAAGAACTCAGGAAACAGTTGCCTAATCACACCTTCCGTACAGGAAGTGACTGTGATGTTATTGCTCACCTGTATGAGGAGCACGGAGAAAACTTTGTGGACATGCTTGATGGTATATTTTCGTTTGTTCTGCTAGATACTCGTGACAACAGTTTTATAGTGGCACGAGATGCAATTGGGGTCACTTCCTTGTACATTGGTTGGGGTCTAGATGGCTCCGTCTGGATTTCATCAGAATTGAAGGGGTTGAATGATGATTGCGAACATTTTGAGTCTTTTCCACCTGGTCACTTGTACTCTAGCAAAGAGAGAGCGTTCCGCAGATGGTACAATCCTCCATGGTTCTCTGAGGCTATTCCCTCAGCACCTTATGATCCTCTTGCTTTGAGGCATGCCTTTGAGAAGGCTGTGGTAAAAAGGTTGATGACTGATGTTCCCTTTGGTGTTTTGCTCTCTGGAGGTTTGGACTCTTCATTGGTTGCAGCCGTCACGGCTCGCTACCTGGCAGGCACAAATGCTGCCAAGCAATGGGGAACCAAATTACACTCTTTCTGTGTAGGCCTTGAGGGTGCACCTGACCTAAAGGCAGCAAAGGAAGTAGCAGACTACATAGGAACTGTACATCATGAATTTCACTACACTGTTCAGGATGGCATAGATGCCATTGAGGATGTGATCTATCACATTGAAACATATGATGTGACAACAATTAGAGCAAGCATTCCCATGTTTCTTATGTCTCGTAAGATCAAGTCATTGGGAGTCAAATGGGTTATATCTGGAGAAGGATCTGATGAGATCTTTGGAGGGTATCTATATTTCCACAAGGCACCAAACAAAGAAGAGTTTCATCAAGAAACATGCCGCAAGATTAAAGCACTCCACAAATATGATTGCTTGCGAGCCAATAAATCGACCTTTGCCTGGGGTCTAGAAGCCAGAGTGCCATTTTTGGACAAAGATTTTATCAGAGTTGCAATGAACATTGATCCTGATTATAAAATGATTAAAAAGGAAGAAGGGCGAATTGAGAAATGGGTACTGAGGAGGGCCTTTGATGATGAAGAACATCCTTATCTGCCAAAGCACATTTTATACAGGCAGAAAGAACAATTCAGTGATGGAGTTGGCTATGGTTGGATTGATGGCCTTAAAGCTCATGCTGAGAAACATGTGACTGACAGAATGATGCTCAATGCTGCTAACATTTTCCCCTTCAACACACCAACCACCAAAGAAGCATACTACTATAGAATGATATTTGAGAGGTTCTTCCCTCAGAACTCAGCCAGGCTGAGTGTTCCTGGAGGACCAAGTGTTGCATGTAGCACAGCCAAAGCTGTAGAGTGGGATGCTGCTTGGTCTAACAACCTTGATCCATCTGGTAGGGCAGCACTTGGAGTGCATGCATCAGCTTATGGAAATCAGGTCAAAGCTGTAGAACCAGAGAAGATCATACCAAAGATGGAAGTTTCCCCACTAGGAGTTGCCATATAG
>Glyma11g27480.1 sequence type=predicted peptide gene model=Glyma11g27480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MCGILAVLGCSDSSQAKRVRVLELSRRLKHRGPDWSGLHQYGDNYLAHQRLAIVDPASGDQPLFNEDKTVVVTVNGEIYNHEELRKQLPNHTFRTGSDCDVIAHLYEEHGENFVDMLDGIFSFVLLDTRDNSFIVARDAIGVTSLYIGWGLDGSVWISSELKGLNDDCEHFESFPPGHLYSSKERAFRRWYNPPWFSEAIPSAPYDPLALRHAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVTARYLAGTNAAKQWGTKLHSFCVGLEGAPDLKAAKEVADYIGTVHHEFHYTVQDGIDAIEDVIYHIETYDVTTIRASIPMFLMSRKIKSLGVKWVISGEGSDEIFGGYLYFHKAPNKEEFHQETCRKIKALHKYDCLRANKSTFAWGLEARVPFLDKDFIRVAMNIDPDYKMIKKEEGRIEKWVLRRAFDDEEHPYLPKHILYRQKEQFSDGVGYGWIDGLKAHAEKHVTDRMMLNAANIFPFNTPTTKEAYYYRMIFERFFPQNSARLSVPGGPSVACSTAKAVEWDAAWSNNLDPSGRAALGVHASAYGNQVKAVEPEKIIPKMEVSPLGVAI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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