|
A newer version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT3G22200 | AT | Annotation by Michelle Graham. TAIR10: Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | chr3:7835286-7838863 FORWARD LENGTH=504 | SoyBase | E_val: 3.00E-21 | ISS |
GO:0005985 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sucrose metabolic process | SoyBase | N/A | ISS |
GO:0006020 | GO-bp | Annotation by Michelle Graham. GO Biological Process: inositol metabolic process | SoyBase | N/A | ISS |
GO:0006105 | GO-bp | Annotation by Michelle Graham. GO Biological Process: succinate metabolic process | SoyBase | N/A | ISS |
GO:0006536 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glutamate metabolic process | SoyBase | N/A | ISS |
GO:0006540 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glutamate decarboxylation to succinate | SoyBase | N/A | ISS |
GO:0006541 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glutamine metabolic process | SoyBase | N/A | ISS |
GO:0006635 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation | SoyBase | N/A | ISS |
GO:0006816 | GO-bp | Annotation by Michelle Graham. GO Biological Process: calcium ion transport | SoyBase | N/A | ISS |
GO:0006979 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to oxidative stress | SoyBase | N/A | ISS |
GO:0007030 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Golgi organization | SoyBase | N/A | ISS |
GO:0009407 | GO-bp | Annotation by Michelle Graham. GO Biological Process: toxin catabolic process | SoyBase | N/A | ISS |
GO:0009448 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gamma-aminobutyric acid metabolic process | SoyBase | N/A | ISS |
GO:0009450 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gamma-aminobutyric acid catabolic process | SoyBase | N/A | ISS |
GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
GO:0009860 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen tube growth | SoyBase | N/A | ISS |
GO:0009865 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen tube adhesion | SoyBase | N/A | ISS |
GO:0010033 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to organic substance | SoyBase | N/A | ISS |
GO:0010154 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fruit development | SoyBase | N/A | ISS |
GO:0010183 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen tube guidance | SoyBase | N/A | ISS |
GO:0019484 | GO-bp | Annotation by Michelle Graham. GO Biological Process: beta-alanine catabolic process | SoyBase | N/A | ISS |
GO:0043161 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteasomal ubiquitin-dependent protein catabolic process | SoyBase | N/A | ISS |
GO:0046686 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cadmium ion | SoyBase | N/A | ISS |
GO:0048364 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root development | SoyBase | N/A | ISS |
GO:0051788 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to misfolded protein | SoyBase | N/A | ISS |
GO:0080129 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteasome core complex assembly | SoyBase | N/A | ISS |
GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
GO:0005774 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane | SoyBase | N/A | ISS |
GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
GO:0003867 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 4-aminobutyrate transaminase activity | SoyBase | N/A | ISS |
GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
GO:0008483 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transaminase activity | SoyBase | N/A | ISS |
GO:0030170 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: pyridoxal phosphate binding | SoyBase | N/A | ISS |
GO:0034387 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 4-aminobutyrate:pyruvate transaminase activity | SoyBase | N/A | ISS |
GO:0050897 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: cobalt ion binding | SoyBase | N/A | ISS |
PTHR11986 | Panther | AMINOTRANSFERASE CLASS III | JGI | ISS | |
PTHR11986:SF24 | Panther | ADENOSYLMETHIONINE-8-AMINO-7-OXONONANOATE AMINOTRANSFERASE-RELATED | JGI | ISS | |
PF00202 | PFAM | Aminotransferase class-III | JGI | ISS | |
UniRef100_G7JPM8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Aminotransferase y4uB n=1 Tax=Medicago truncatula RepID=G7JPM8_MEDTR | SoyBase | E_val: 5.00E-22 | ISS |
UniRef100_I1LLM0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1LLM0_SOYBN | SoyBase | E_val: 7.00E-139 | ISS |
Glyma11g27450 not represented in the dataset |
Glyma11g27450 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Corresponding Name | Annotation Version | Evidence | Comments |
---|
Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g27450.1 sequence type=CDS gene model=Glyma11g27450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTAAACGTCAAAGAATCCAAAAAAAAATATGGTACACCATTAGAGAAACTAGACCTGCATAATGCTGGCTACCTTGCACAGAAACGCCTTGCGTGTGGTGAGACAGAGGAAGAATTTTCAACCAGATTAGGCAATAATTTGGAGCAGCTGATTCTGAAAGAGGGACTAAAGCCAGTAATACATTCAGATACATGCAAAGTGGTTTCTACTACTGGAACATTGATTGGGACAATGTTTGGATGTGACAAGTACAACATTAAGCCAGACCTTGTATCCCTGGCTAAGGCACTATCTTCTGCATATTTGCCAATTGGAGCTGTCCTTGTAAGCCCGAAAATTTTCCCCGACACAACTTTTCAAACATGCAATAGATACATCATATTAAAAATGGTCCACATACCAGTGATTTGTTTTCTGTATCAATATTACCTGAGTAATAAAATCCAAACTCTTGGATCATACAGGGTGCCTTCAGGAAGGGAAGTTTTATTTAAACAGATTGACAATACTCACTTTGCCTATTGTGGAGAAATGGGGCAGGATTTATGGGATTGCGTGAATTTGACACCAAGC
>Glyma11g27450.1 sequence type=predicted peptide gene model=Glyma11g27450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high LNVKESKKKYGTPLEKLDLHNAGYLAQKRLACGETEEEFSTRLGNNLEQLILKEGLKPVIHSDTCKVVSTTGTLIGTMFGCDKYNIKPDLVSLAKALSSAYLPIGAVLVSPKIFPDTTFQTCNRYIILKMVHIPVICFLYQYYLSNKIQTLGSYRVPSGREVLFKQIDNTHFAYCGEMGQDLWDCVNLTPS
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||