Glyma11g27411 - SoyBase

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Report for Sequence Feature Glyma11g27411

Feature Type:	gene_model
Chromosome:	Gm11
Start:	27111078
stop:	27127462
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g27411

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G07110	AT	Annotation by Michelle Graham. TAIR10: fructose-2,6-bisphosphatase \| chr1:2178363-2183980 REVERSE LENGTH=744	SoyBase	E_val: 0	ISS
GO:0006000	GO-bp	Annotation by Michelle Graham. GO Biological Process: fructose metabolic process	SoyBase	N/A	ISS
GO:0006002	GO-bp	Annotation by Michelle Graham. GO Biological Process: fructose 6-phosphate metabolic process	SoyBase	N/A	ISS
GO:0006003	GO-bp	Annotation by Michelle Graham. GO Biological Process: fructose 2,6-bisphosphate metabolic process	SoyBase	N/A	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0042732	GO-bp	Annotation by Michelle Graham. GO Biological Process: D-xylose metabolic process	SoyBase	N/A	ISS
GO:0043609	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of carbon utilization	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0003873	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 6-phosphofructo-2-kinase activity	SoyBase	N/A	ISS
GO:0004331	GO-mf	Annotation by Michelle Graham. GO Molecular Function: fructose-2,6-bisphosphate 2-phosphatase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0030246	GO-mf	Annotation by Michelle Graham. GO Molecular Function: carbohydrate binding	SoyBase	N/A	ISS
GO:2001070	GO-mf	Annotation by Michelle Graham. GO Molecular Function: starch binding	SoyBase	N/A	ISS
PTHR10606	Panther	6-PHOSPHOFRUCTO-2-KINASE/FRUCTOSE-2,6-BISPHOSPHATASE	JGI		ISS
PTHR10606:SF7	Panther	FRUCTOSE-6-PHOSPHATE,2-KINASE/FRUCTOSE-2, 6-BISPHOSPHATASE	JGI		ISS
PF00300	PFAM	Phosphoglycerate mutase family	JGI		ISS
PF01591	PFAM	6-phosphofructo-2-kinase	JGI		ISS
UniRef100_Q93XR7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Fructose-6-phosphate 2-kinase/fructose-2,6-bisphosphatase n=1 Tax=Bruguiera gymnorhiza RepID=Q93XR7_BRUGY	SoyBase	E_val: 0	ISS
UniRef100_UPI000233E9EC	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E9EC related cluster n=1 Tax=unknown RepID=UPI000233E9EC	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma11g27411

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g27411 not represented in the dataset	Glyma11g27411 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma11g27411 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma11g27411

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma11g27411

Limit To All Plant Sequences

>Glyma11g27411.1   sequence type=CDS   gene model=Glyma11g27411   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAACGGGTGCATCGAAGGACGCAGATGAAGGGAGCAAGGAAGAGCGTGAGAGGCTCGACCATGCAGGTGGCCAACTCTACGTGTCTCTCAAGATGGAGAATCACAAGCTCACAGGGGACCTTGTTCCTCACGTTTATGGCTCCGTTCCTCTCGTGGGTTCTTGGGATCCTTCCAAAGCTGTAATTTTGATCCCTACCCTTTTCTTCCTTTGGTTCGTGTGTTACTGGGTGTGTCTTCTTTTTCGTTGTTTCTCATTGCTTTTTTGGGTTTTGGTGTTAGCTTTTCATGGAGCGGGAATCGTGTCAATGTGGGAACTTAGCTTTGTTGTCCCACCTAATCACGGACAGCACAGCAATACACCTTGTTTTGTCGAGGAGGGTCCTAGCCGCCTGCTTGTGGGGGGAGCATTGCAAGAGGATGCAAGGCTTGCGTTGTTTAGGCTTGATAGTGGCGAGGTTCTTCAGTATCAAGTGTTTGTTAAAGCAGACAGGGTTTCTCCCTTTGACCTTGCAGCTAGTTGGAGGGCTTATCAGGATAAATTCCGTCCTTCATCTGTGAGATGGATTCCGGATGTGAGCATAAATTCAGCACCTCAGACCGGTGGGGAGAATGGTTGTTCTGTGGGTTTGGAACTTGATCTTGAGCATTATGTTGTCCCAACTCCCGCAACTGCTGCAAATTCAGCTCATGTATATGCCGCTAACATGACAGAGAATCCAAGGTCACTAATTTGTGGGTCTGGCAGCAGTTCATATCCCATCAAGGAAATGCAGGTTATTGTGCCTGATCCATCTAAGATGTTTCAAAGTTCTGGAATGGTTGAATCCAAGTCAGTTGGAACATTTTCACCTCTGCAAAAGCAAGAGAGTCAGAGGGGACTTTTTGTTGATAGAGGTGTTGGATCTCCTAGACTTGTAAAATCTTCTAGTTCATATATTTTCTCTACTGATCTCAATTTGGATAACGAAACCAAGAATTCAATGCCAGCTGCTGCTGGAGCTGTCGCTGCTGCAGCTGTTGCTGATCAGATGCTGGGTCCCAAGGAAGATAGACATTTGGCAATTATCCTGGTGGGTCTGCCAGCCAGAGGTAAAACTTTCACTGCAGCTAAACTTACAAGATATCTTCATTGGTTAGGTCATAATACCAAACACTTCAATGTTGGGAAGTATCGTTGCCTTAAGCATGGAGCTAATCAGTCTGCTGACTTCTTTCGAGCTGACAATCCTGAAGGCGTGGAGGCACGCAATGAGGTAGCAGCACTGGCATTTGAAGATATGATCTCTTGGATGCAAGAAGGTGGCCAGGTTGGGATATTTGATGCCACAAACAGTAGCAAAGAACGAAGAAACATGCTGATGAAATTGGCTGAAGGAAGATGCAAGATAATCTTCCTGGAAACAATATGCAATGATAGAAATATAATTGAAAGGAATATTCGCCTTAAAATTCAGCAAAGTCCTGATTATGCAGAAGAGCCAGATTTTGAGACTGGATTGCAAGACTTTAAAAATCGTCTAGAAAATTATGAGAAGGTTTATGAGACAGTTAATGAAGGATCTTACATAAAAATGATTGATATGGTCAGTGGGCATGGTGGACAAATACAAGTGAACAATATCAGTGGCTACCTTCCTGGACGAATTGTCTTTTTCTTGGTAAATACACATCTTACACCACGCCCAATTTTACTTACCCGACATGGGGAAAGTCAGGATAATGTTAGAGGCAGAAGAATTGGAGGGGATACTGCAATAAGTGAGGCTGGAGAACTTTATTCAAAGAAGCTTGCCAAGTTTGTTGGAAAGCGTATCAAATCAGAACGGGCTGCTTCTATATGGACTAGTACACTGCAACGAACAATTCTGACAGCCACTCCAATTGTTGGATTTCCCAAGGTTAGTGTCATACTTAAGTTTATGGTTGTGTACAGTCATGCTATTTATTTCACGAGAAATAGGTTGACAAATGTACACATTTTGACTTACTATCTATAA

Predicted protein sequences of Glyma11g27411

Limit To All Plant Sequences

>Glyma11g27411.1   sequence type=predicted peptide   gene model=Glyma11g27411   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGTGASKDADEGSKEERERLDHAGGQLYVSLKMENHKLTGDLVPHVYGSVPLVGSWDPSKAVILIPTLFFLWFVCYWVCLLFRCFSLLFWVLVLAFHGAGIVSMWELSFVVPPNHGQHSNTPCFVEEGPSRLLVGGALQEDARLALFRLDSGEVLQYQVFVKADRVSPFDLAASWRAYQDKFRPSSVRWIPDVSINSAPQTGGENGCSVGLELDLEHYVVPTPATAANSAHVYAANMTENPRSLICGSGSSSYPIKEMQVIVPDPSKMFQSSGMVESKSVGTFSPLQKQESQRGLFVDRGVGSPRLVKSSSSYIFSTDLNLDNETKNSMPAAAGAVAAAAVADQMLGPKEDRHLAIILVGLPARGKTFTAAKLTRYLHWLGHNTKHFNVGKYRCLKHGANQSADFFRADNPEGVEARNEVAALAFEDMISWMQEGGQVGIFDATNSSKERRNMLMKLAEGRCKIIFLETICNDRNIIERNIRLKIQQSPDYAEEPDFETGLQDFKNRLENYEKVYETVNEGSYIKMIDMVSGHGGQIQVNNISGYLPGRIVFFLVNTHLTPRPILLTRHGESQDNVRGRRIGGDTAISEAGELYSKKLAKFVGKRIKSERAASIWTSTLQRTILTATPIVGFPKVSVILKFMVVYSHAIYFTRNRLTNVHILTYYL*

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