SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G07910 | AT | Annotation by Michelle Graham. TAIR10: RNAligase | chr1:2446712-2454386 FORWARD LENGTH=1104 | SoyBase | E_val: 5.00E-26 | ISS |
| GO:0006388 | GO-bp | Annotation by Michelle Graham. GO Biological Process: tRNA splicing, via endonucleolytic cleavage and ligation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003972 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA ligase (ATP) activity | SoyBase | N/A | ISS |
| GO:0004113 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 2',3'-cyclic-nucleotide 3'-phosphodiesterase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0051731 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: polynucleotide 5'-hydroxyl-kinase activity | SoyBase | N/A | ISS |
| UniRef100_G7JQJ1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: RNA ligase isoform n=1 Tax=Medicago truncatula RepID=G7JQJ1_MEDTR | SoyBase | E_val: 4.00E-35 | ISS |
| UniRef100_G7JQJ1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: RNA ligase isoform n=1 Tax=Medicago truncatula RepID=G7JQJ1_MEDTR | SoyBase | E_val: 4.00E-35 | ISS |
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Glyma11g27373 not represented in the dataset |
Glyma11g27373 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g172800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g27373.2 sequence type=transcript gene model=Glyma11g27373 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGGGGCAATTATCTGTTACGGTAGACGCAGCTGTGGAAACTGTTAGTAACAAGCTCGGTGGATTGAGTATTGGCGAAAACAGTGGGAAAACTGCGGCGCAAGGTTCGACTGTGATTTGGAAACGTAAATCTTATGGAACTGCGAGTGGAGGCAATGTTACTGAAGTTGAAAATGGAGCTGGAGTTGATGCAGGTGTGGCTTCAACGCAAAAGAGCAGTGGCAGTGGTTTGAGTAAGATATTTTGCGGTAATTTCCTGAAGAATTTCACCTACTCACGTGCACAAGTTAGAGCGACTTTCTATCCTAAATTTGAAAATGAGAAGGCAGATCAAGAGGCATATTCTTTCTGTCACAAATTTTCCCTGTTTCGAAATGTATCATGTGATTTCTGCGATTTATGTTTGAACTTTGAAGTTCGGACCAGGATGATTGAGTTGGTGGCAAAAGGTTTGGCTACGATAAAGTTATACTGCTGTTAGTGTATTTGTTCTTGGACGGATGTTTCGTGAGGCTTGGGGAACTGAAGCTTCAAAAAAGCAGGTTGAATTTAATAATTTTCTTGAGGGAAAATTATAAATTATAGATAAAGAACAAAGAGGATTGAATTTAATAGCATCTCTAGGATTCTGTGGTAGTGT
>Glyma11g27373.1 sequence type=CDS gene model=Glyma11g27373 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGGGGCAATTATCTGTTACGGTAGACGCAGCTGTGGAAACTGTTAGTAACAAGCTCGGTGGATTGAGTATTGGCGAAAACAGTGGGAAAACTGCGGCGCAAGGTTCGACTGTGATTTGGAAACGTAAATCTTATGGAACTGCGAGTGGAGGCAATGTTACTGAAGTTGAAAATGGAGCTGGAGTTGATGCAGGTGTGGCTTCAACGCAAAAGAGCAGTGGCAGTGGTTTGAGTAAGATATTTTGCGGTAATTTCCTGAAGAATTTCACCTACTCACGTGCACAAGTTAGAGCGACTTTCTATCCTAAATTTGAAAATGAGAAGGCAGATCAAGAGGCATATTCTTTCTGTCACAAATTTTCCCTGTTTCGAAATGTATCATGTGATTTCTGCGATTTATGTTTGAACTTTGAAGTTCGGACCAGGATGATTGAGTTGGTGGCAAAAGGTTTGGCTACGATAAAGGTTCAGCTTTCTCATTTGCAGGATTGA >Glyma11g27373.2 sequence type=CDS gene model=Glyma11g27373 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGGGGCAATTATCTGTTACGGTAGACGCAGCTGTGGAAACTGTTAGTAACAAGCTCGGTGGATTGAGTATTGGCGAAAACAGTGGGAAAACTGCGGCGCAAGGTTCGACTGTGATTTGGAAACGTAAATCTTATGGAACTGCGAGTGGAGGCAATGTTACTGAAGTTGAAAATGGAGCTGGAGTTGATGCAGGTGTGGCTTCAACGCAAAAGAGCAGTGGCAGTGGTTTGAGTAAGATATTTTGCGGTAATTTCCTGAAGAATTTCACCTACTCACGTGCACAAGTTAGAGCGACTTTCTATCCTAAATTTGAAAATGAGAAGGCAGATCAAGAGGCATATTCTTTCTGTCACAAATTTTCCCTGTTTCGAAATGTATCATGTGATTTCTGCGATTTATGTTTGAACTTTGAAGTTCGGACCAGGATGATTGAGTTGGTGGCAAAAGGTTTGGCTACGATAAAGTTATACTGCTGTTAG
>Glyma11g27373.1 sequence type=predicted peptide gene model=Glyma11g27373 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKGQLSVTVDAAVETVSNKLGGLSIGENSGKTAAQGSTVIWKRKSYGTASGGNVTEVENGAGVDAGVASTQKSSGSGLSKIFCGNFLKNFTYSRAQVRATFYPKFENEKADQEAYSFCHKFSLFRNVSCDFCDLCLNFEVRTRMIELVAKGLATIKVQLSHLQD* >Glyma11g27373.2 sequence type=predicted peptide gene model=Glyma11g27373 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKGQLSVTVDAAVETVSNKLGGLSIGENSGKTAAQGSTVIWKRKSYGTASGGNVTEVENGAGVDAGVASTQKSSGSGLSKIFCGNFLKNFTYSRAQVRATFYPKFENEKADQEAYSFCHKFSLFRNVSCDFCDLCLNFEVRTRMIELVAKGLATIKLYCC*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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