SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G07180 | AT | Annotation by Michelle Graham. TAIR10: alternative NAD(P)H dehydrogenase 1 | chr1:2204414-2206773 FORWARD LENGTH=510 | SoyBase | E_val: 0 | ISS |
| GO:0010264 | GO-bp | Annotation by Michelle Graham. GO Biological Process: myo-inositol hexakisphosphate biosynthetic process | SoyBase | N/A | ISS |
| GO:0071482 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to light stimulus | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005777 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: peroxisome | SoyBase | N/A | ISS |
| GO:0031304 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intrinsic to mitochondrial inner membrane | SoyBase | N/A | ISS |
| GO:0003954 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: NADH dehydrogenase activity | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| GO:0050660 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: flavin adenine dinucleotide binding | SoyBase | N/A | ISS |
| KOG2495 | KOG | NADH-dehydrogenase (ubiquinone) | JGI | ISS | |
| PTHR22915 | Panther | NADH DEHYDROGENASE-RELATED | JGI | ISS | |
| PTHR22915:SF4 | Panther | NADH DEHYDROGENASE-RELATED | JGI | ISS | |
| PF00070 | PFAM | Pyridine nucleotide-disulphide oxidoreductase | JGI | ISS | |
| PF07992 | PFAM | Pyridine nucleotide-disulphide oxidoreductase | JGI | ISS | |
| UniRef100_I1LLL3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LLL3_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q8GWA1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Alternative NAD(P)H dehydrogenase 1, mitochondrial n=1 Tax=Arabidopsis thaliana RepID=NDA1_ARATH | SoyBase | E_val: 0 | ISS |
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Glyma11g27280 not represented in the dataset |
Glyma11g27280 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma18g06920 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g173700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g27280.1 sequence type=CDS gene model=Glyma11g27280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTGGTTAAGAAACCTCTCAAAGTTTGCCACCATGAAAAGAGCATCATCATCATCATCTCAAAGACCCAAAAACACTGACCCATTTTGTCTATTACCCTCCTTCACTTTTTTTTCCAACTTCAGCACTAACACCATTGAGGAGAAGCCCTGTGTGAAGCCAGTTGAGTATAATAATTATTCGGGCTTGCAGCCAACAAGGCCTCATGAGAAGCCACGTGTGGTGGTGCTGGGCTCAGGTTGGGCCGGGTGCAGGCTCATGAAGGGCTTGGACCCTCGTGTGTATGACATTGTTTGTGTCTCACCTCGCAACCACATGGTCTTCACCCCTCTATTAGCCTCTACTTGTGTTGGAACTCTTGAGTTTAGATCCGTTGCTGAACCCATTGGGAGGATCCAACCAGCTATTTCTAGAGAGCCTGGTTCTTATTTCTTCCTCGCCAATTGTACTCAAATTGATGCACATAACCATATGGTGCACTGTGAGACTGTAACCGAAGGAGTAGAGACAATAGCTCCCTGGAAATTCACAATCTCATATGACAAGCTGGTAATTGCATTAGGGTCACAGCCTTCCACTTTTGGAATTCAAGGAGTCAAAGAACATGCCATCTTTCTTCGTGAAGTTCACCATGCACAGGAAATTCGTAGGAAGCTGCTCCTGAACTTGATGCTGTCTGATGTTCCAGGTATTTCAGAAGAGGAGAAGCAAAGGCTTTTACATTGTGTGGTTGTGGGGGGTGGTCCTACTGGAGTAGAATTCAGTGGTGAGCTTAGCGATTTTATCACGAAAGATGTTCGTCAGAGATATGTCCATGTAAAGGATTACATCCGTGTCACTTTAATTGAGGCAAATGAGATATTGTCTTCCTTTGATGACCGGCTTAGGCGCTATGCTACCAAGCAATTGACAAAGTCAGGAGTTCGTCTTGTTCGTGGCATTGTGAAAGATGTTAAACCTCAGAAGATTTCCCTTAATGATGGCTCTGAGGTTCCATACGGGTTGTTGGTATGGTCCACTGGTGTTGGTCCATTGCCTATGATTCAATCTTTGGATCTCCCAAAAGCTCCTGGTGGGAGGATTGGTGTTGATGAGTGGCTCCGTGTTCCTTCGGTACAAGATGTGTTCTCAATAGGAGACTGCAGTGGATTTGTTGAAAGTACTGGAAGACAAACACTTCCTGCATTAGCCCAAGTTGCAGAGAGGCAAGGTAAATATTTAGCAGCTCTACTAAACAAAATTGGAAAAGCAGGTGCAGGCCATGCAAACAGTGCAAAAGAAATAGAGTTTGGGGATCCATTTGTTTATAGGCACCTTGGAAGCATGGCAACTATTGGTAGATATAAGGCCCTTGTTGATCTTAGACAGACCAAGGAGGCAAAAGGGTTGGCTCTGGCAGGATTTCTGAGTTTTTTTATTTGGCGCTCGGCATACATCACGCGTGTTATCAGCTGGAGGAACAGATTCTATGTATTTGTCAACTGGATTACAACTGTGGTATTTGGCCGCGATATAAGCAGATTATGA
>Glyma11g27280.1 sequence type=predicted peptide gene model=Glyma11g27280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAWLRNLSKFATMKRASSSSSQRPKNTDPFCLLPSFTFFSNFSTNTIEEKPCVKPVEYNNYSGLQPTRPHEKPRVVVLGSGWAGCRLMKGLDPRVYDIVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIGRIQPAISREPGSYFFLANCTQIDAHNHMVHCETVTEGVETIAPWKFTISYDKLVIALGSQPSTFGIQGVKEHAIFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKQRLLHCVVVGGGPTGVEFSGELSDFITKDVRQRYVHVKDYIRVTLIEANEILSSFDDRLRRYATKQLTKSGVRLVRGIVKDVKPQKISLNDGSEVPYGLLVWSTGVGPLPMIQSLDLPKAPGGRIGVDEWLRVPSVQDVFSIGDCSGFVESTGRQTLPALAQVAERQGKYLAALLNKIGKAGAGHANSAKEIEFGDPFVYRHLGSMATIGRYKALVDLRQTKEAKGLALAGFLSFFIWRSAYITRVISWRNRFYVFVNWITTVVFGRDISRL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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