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Integrating Genetics and Genomics to Advance Soybean Research




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Report for Sequence Feature Glyma11g26500

Feature Type:gene_model
Chromosome:Gm11
Start:25483961
stop:25486750
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G58860AT Annotation by Michelle Graham. TAIR10: cytochrome P450, family 86, subfamily A, polypeptide 1 | chr5:23765999-23767997 REVERSE LENGTH=513 SoyBaseE_val: 0ISS
GO:0000041GO-bp Annotation by Michelle Graham. GO Biological Process: transition metal ion transport SoyBaseN/AISS
GO:0006631GO-bp Annotation by Michelle Graham. GO Biological Process: fatty acid metabolic process SoyBaseN/AISS
GO:0010345GO-bp Annotation by Michelle Graham. GO Biological Process: suberin biosynthetic process SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0005506GO-mf Annotation by Michelle Graham. GO Molecular Function: iron ion binding SoyBaseN/AISS
GO:0009055GO-mf Annotation by Michelle Graham. GO Molecular Function: electron carrier activity SoyBaseN/AISS
GO:0016705GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen SoyBaseN/AISS
GO:0018685GO-mf Annotation by Michelle Graham. GO Molecular Function: alkane 1-monooxygenase activity SoyBaseN/AISS
GO:0019825GO-mf Annotation by Michelle Graham. GO Molecular Function: oxygen binding SoyBaseN/AISS
GO:0020037GO-mf Annotation by Michelle Graham. GO Molecular Function: heme binding SoyBaseN/AISS
KOG0157 KOG Cytochrome P450 CYP4/CYP19/CYP26 subfamilies JGI ISS
PTHR24296Panther FAMILY NOT NAMED JGI ISS
PF00067PFAM Cytochrome P450 JGI ISS
UniRef100_B9TST2UniRef Annotation by Michelle Graham. Most informative UniRef hit: CYP86A32 fatty acid omega-hydroxylase n=1 Tax=Quercus suber RepID=B9TST2_QUESU SoyBaseE_val: 0ISS
UniRef100_UPI000233C9B2UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233C9B2 related cluster n=1 Tax=unknown RepID=UPI000233C9B2 SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g26500 not represented in the dataset

Glyma11g26500 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.11g175900 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma11g26500.1   sequence type=CDS   gene model=Glyma11g26500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGCAAATGGATACACTCCATCTTCTCTTCACCCTAGCTGCTCTTTTATCCGCATATTTCGTTTGGTTCCATCTCTTGGCTCGAACCCTAACCGGTCCAAAAGTATGGCCCTTGGTTGGTAGCCTTCCAAGCATGATCGTGAACCGCAATCGGGTTCACGACTGGATGGCTGCCAACCTCCGCCAAATCGAGGGATCGGCCACCTACCAAACCTGCACCCTCACCCTCCCCTTCTTTGCTTGCAAGCAGGCTTTCTTTACCGTCACTAGCAATCCTAGAAACATAGAACACATCCTCCGAACCCGGTTTGACAACTACCCCAAGGGACCCCACTGGCAGGCAGCCTTCCACGACCTCCTAGGCCAAGGAATCTTCAACAGCGACGGTGACACGTGGCTGATGCAACGTAAAACCGCTGCCCTAGAGTTCACCACCCGAACCCTAAGACAAGCCATGGCTCGCTGGGTGAACCGGACCATAAAAAACCGTCTTTGGTGCATTTTGGATAAAGCTGCTAAGGAAAATGTCTCGGTAGATTTGCAAGACCTTCTTTTGCGTTTAACCTTTGATAATATTTGTGGACTCACCTTCGGTAAAGACCCCGAAACTCTCTCGCCGGAACTACCCGAAAACCCCTTCACTGTTGCCTTTGACACTGCCACAGAAATCACCTTGCAAAGGCTTCTGTACCCTGGCATAATATGGAGATTCGAGAAGCTTCTTGGCATCGGTAAGGAGAAGAAAATACATCAGAGTTTGAAGATCGTCGAAACTTACATGAACGACGCCGTTTCAGCTCGTGAGAAATCGCCTTCCGACGACTTGCTATCAAGGTTCATAAAGAAGCGTGACGGTGCCGGAAAAACACTGAGTGCTGCCGCTCTGCGACAAATCGCGTTGAACTTCCTCCTCGCCGGCAGGGACACGTCGTCGGTGGCGTTAAGCTGGTTCTTCTGGCTCGTCATGAACCACCCCGACGTGGAAGAGAAGATTCTCGACGAACTAACGGCGGTGCTTACTTCCACACGCGGCAGCGACCAGCGGTGCTGGACAGAGGAAGCAGTGGACTTCGAAGAAGCGGAGAAACTGGTTTACTTAAAAGCAGCCTTAGCTGAGACACTGCGTTTGTATCCGTCGGTGCCGGAGGATTTCAAGCACGCGATCGCCGACGATGTGTTGCCGGACGGCACGGCGGTTCCGGCAGGTTCAACGGTGACGTATTCGATTTACGCAATGGGGAGAATGAAGAGCGTGTGGGGCGAGGATTGCATGGAGTTTAAACCGGAGCGGTTTTTATCGGTTCAGGGAGACCGGTTCGAACTGCCAAAAGACGGTTACAAGTTCGTTGCGTTTAACGCTGGACCGAGAACCTGTTTGGGGAAGGACTTAGCTTACCTTCAGATGAAGTCTGTGGCTTCCGCTGTGCTTCTGCGTTACCGGCTGTCGCCGGTTCCCGGTCACCGGGTGCAGCAGAAGATGTCGCTCACTCTCTTCATGAAGCATGGGCTCCGCGTGTTCTTGCAGACACGTCAGCTTCAACCGCAGGCCACCACGTCTGCATAG

>Glyma11g26500.1   sequence type=predicted peptide   gene model=Glyma11g26500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVQMDTLHLLFTLAALLSAYFVWFHLLARTLTGPKVWPLVGSLPSMIVNRNRVHDWMAANLRQIEGSATYQTCTLTLPFFACKQAFFTVTSNPRNIEHILRTRFDNYPKGPHWQAAFHDLLGQGIFNSDGDTWLMQRKTAALEFTTRTLRQAMARWVNRTIKNRLWCILDKAAKENVSVDLQDLLLRLTFDNICGLTFGKDPETLSPELPENPFTVAFDTATEITLQRLLYPGIIWRFEKLLGIGKEKKIHQSLKIVETYMNDAVSAREKSPSDDLLSRFIKKRDGAGKTLSAAALRQIALNFLLAGRDTSSVALSWFFWLVMNHPDVEEKILDELTAVLTSTRGSDQRCWTEEAVDFEEAEKLVYLKAALAETLRLYPSVPEDFKHAIADDVLPDGTAVPAGSTVTYSIYAMGRMKSVWGEDCMEFKPERFLSVQGDRFELPKDGYKFVAFNAGPRTCLGKDLAYLQMKSVASAVLLRYRLSPVPGHRVQQKMSLTLFMKHGLRVFLQTRQLQPQATTSA*







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