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Report for Sequence Feature Glyma11g26491

Feature Type:gene_model
Chromosome:Gm11
Start:25472646
stop:25474193
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma11g26491
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G47070AT Annotation by Michelle Graham. TAIR10: LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thylakoid soluble phosphoprotein TSP9 (InterPro:IPR021584); Has 37 Blast hits to 37 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:17337205-17337507 REVERSE LENGTH=100 SoyBaseE_val: 3.00E-16ISS
GO:0006364GO-bp Annotation by Michelle Graham. GO Biological Process: rRNA processing SoyBaseN/AISS
GO:0009637GO-bp Annotation by Michelle Graham. GO Biological Process: response to blue light SoyBaseN/AISS
GO:0009902GO-bp Annotation by Michelle Graham. GO Biological Process: chloroplast relocation SoyBaseN/AISS
GO:0010027GO-bp Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization SoyBaseN/AISS
GO:0010114GO-bp Annotation by Michelle Graham. GO Biological Process: response to red light SoyBaseN/AISS
GO:0010218GO-bp Annotation by Michelle Graham. GO Biological Process: response to far red light SoyBaseN/AISS
GO:0015979GO-bp Annotation by Michelle Graham. GO Biological Process: photosynthesis SoyBaseN/AISS
GO:0030003GO-bp Annotation by Michelle Graham. GO Biological Process: cellular cation homeostasis SoyBaseN/AISS
GO:0034660GO-bp Annotation by Michelle Graham. GO Biological Process: ncRNA metabolic process SoyBaseN/AISS
GO:0070838GO-bp Annotation by Michelle Graham. GO Biological Process: divalent metal ion transport SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009534GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid SoyBaseN/AISS
GO:0009535GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane SoyBaseN/AISS
GO:0009579GO-cc Annotation by Michelle Graham. GO Cellular Compartment: thylakoid SoyBaseN/AISS
GO:0009941GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope SoyBaseN/AISS
PF11493PFAM Thylakoid soluble phosphoprotein TSP9 JGI ISS
UniRef100_I6Y9K3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Thylakoid soluble phosphoprotein n=1 Tax=Linum usitatissimum RepID=I6Y9K3_LINUS SoyBaseE_val: 6.00E-17ISS
UniRef100_UPI000233C9B6UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233C9B6 related cluster n=1 Tax=unknown RepID=UPI000233C9B6 SoyBaseE_val: 1.00E-57ISS

Expression Patterns of Glyma11g26491
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g26491 not represented in the dataset
Glyma11g26491 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g26491
ParalogEvidenceComments
Glyma18g07310 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g26491 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.11g176000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma11g26491
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma11g26491
>Glyma11g26491.1   sequence type=CDS   gene model=Glyma11g26491   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCCATCATCATGTCATTTGCTCCAGCAACTGGTAGAGTCTTTGCAGCCACAGCAGCAAAGGGTGCTGGTGGAAGCAAAGAGAAGGGTCTTCTTGATTGGATAATTGGAGGATTGCAGAAGGAAGACCAGCTGGTAGAGACTGATCCTATCCTCAAGAAGGTGGAGGAGAAGAATGGAGGCACCACCACCACCACCACTGGCCGCAACAAGAACTCTGTGGCAGTGCCACAAAAGAAGAAAGGTGGCTTTGGAGGCCTCTTTGCCAAGAACTGA
Predicted protein sequences of Glyma11g26491
>Glyma11g26491.1   sequence type=predicted peptide   gene model=Glyma11g26491   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASIIMSFAPATGRVFAATAAKGAGGSKEKGLLDWIIGGLQKEDQLVETDPILKKVEEKNGGTTTTTTGRNKNSVAVPQKKKGGFGGLFAKN*






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