Glyma11g26470 - SoyBase

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Report for Sequence Feature Glyma11g26470

Feature Type:	gene_model
Chromosome:	Gm11
Start:	25462480
stop:	25469763
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g26470

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G29630	AT	Annotation by Michelle Graham. TAIR10: thiaminC \| chr2:12667395-12669569 FORWARD LENGTH=644	SoyBase	E_val: 0	ISS
GO:0000023	GO-bp	Annotation by Michelle Graham. GO Biological Process: maltose metabolic process	SoyBase	N/A	ISS
GO:0006098	GO-bp	Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt	SoyBase	N/A	ISS
GO:0009228	GO-bp	Annotation by Michelle Graham. GO Biological Process: thiamine biosynthetic process	SoyBase	N/A	ISS
GO:0010266	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to vitamin B1	SoyBase	N/A	ISS
GO:0016045	GO-bp	Annotation by Michelle Graham. GO Biological Process: detection of bacterium	SoyBase	N/A	ISS
GO:0019252	GO-bp	Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process	SoyBase	N/A	ISS
GO:0019288	GO-bp	Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway	SoyBase	N/A	ISS
GO:0019760	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucosinolate metabolic process	SoyBase	N/A	ISS
GO:0043085	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of catalytic activity	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009536	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0051536	GO-mf	Annotation by Michelle Graham. GO Molecular Function: iron-sulfur cluster binding	SoyBase	N/A	ISS
GO:0080041	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ADP-ribose pyrophosphohydrolase activity	SoyBase	N/A	ISS
PF01964	PFAM	ThiC family	JGI		ISS
UniRef100_E4MX93	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: mRNA, clone: RTFL01-17-G05 n=1 Tax=Eutrema halophilum RepID=E4MX93_THEHA	SoyBase	E_val: 0	ISS
UniRef100_I1LLJ2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LLJ2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma11g26470

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g26470 not represented in the dataset	Glyma11g26470 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g26470

Paralog	Evidence	Comments
Glyma18g07290	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g26470 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g176200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g26470

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma11g26470

Limit To All Plant Sequences

>Glyma11g26470.3   sequence type=transcript   gene model=Glyma11g26470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTGTTACCAATTATCAACGAAAGGAAGTTTGATAATTTGATGTGAAAAAATATCTTAGTCCGAGTCACGAGAGACACGGCATGTGCCACTTTTGCTTCATACTACTATCTGCCACTCTCTATATAATGCAGCGCTTGTGTTCAACCATTCACTTCACAACTCAAACTGCTTCATTGCATAATTGCAGATAAGATCAACCCTTCTACCTTCAGATTCGCGGGAAGATGGCATCACTTCATGCTAATGTGACATCAGTTGTTTACAACAGTGGCAACCGTGTTTCTCAATCGAAATTTGCAAGCTCTTCCTTCTTGTCTGGGTTCGATGTTGTTGGTCGTGCTTCAAGTGCTTGGAAGAAGGAACTTGTCCCATCTTCCATTTCCTTGGTGCCTAGAGCCACCCTAACATTTGATCCCCCAACTACCAATTCAGACATAACCAAGCAAAAGAAGCACACTCTTGACCCTGCTTCTCCAGATTTTCTTCCTCTTCCTTCATTTGAACAGTGCTTTCCAAAGAGCACCAAAGAACACAGGGAAGTCACTCATGAAGAAACTGGTCATGTGCTCAAAGTTCCCTTTCGTCGAGTTCACCTGTCTGGGGAAGCAGGACACTTTGATACCTATGACACTAGCGGTCCCCAAAATGTAAACCCAAGGACAGGACTCCCAAAATTGCGCGGAGGGTGGGTTGATAGGAGGGAGAAACTGGGTTATCCAAGATTCACTCAGATGTACTACGCTAAGCAAGGAATCATCACTGAGGAGATGCTTTACTGTGCCACTCGTGAGAACCTTGACCCAGAGTTTGTGAGGTCAGAAGTTGCTCGTGGACGTGCTATCATCCCTTCGAACAAGAAACACTTGGAGTTAGAGCCCATGATAGTTGGAAGAAACTTTTTGGTAAAAGTAAATGCCAACATTGGGAATTCTGCCGTTGCTAGCTCTATAGAAGAGGAAGTTTACAAGGTTCAATGGGCAACTATGTGGGGAGCAGATACTGCCATGGATCTCTCGACTGGTCGCCACATCCATGAAACTCGAGAGTGGATCCTACGCAACTCTGCTGTACCAATTGGGACTGTGCCTATTTATCAAGCACTTGAAAAAGTTAATGGGATTGCTGAGGATCTTAACTGGAAGGTTTTCAGGGACACCCTGATTGAACAAGCTGAGCAGGGTGTGGATTACTTCACCATCCATGCAGGAGTTCTTCTGAGATACGTTCCATTAACGGCTAAGCGCATGACAGGAATAGTCTCAAGAGGAGGGTCTATTCATGCAAAGTGGTGCTTAGCTTATCACAAAGAGAATTTTGCTTATGAGCACTGGGATGAGATACTTGACATCTGCAATCAGTATGATGTGGCCCTATCCATTGGTGATGGGCTAAGACCTGGATCCATCTATGATGCAAATGACACAGCTCAGTTCGCCGAACTCTTGACACAAGGAGAATTGACCCGTAGAGCATGGGAGAAGGATGTACAGGTGATGAATGAAGGACCTGGACATGTCCCAATGCACAAGATTCCTGAAAACATGCAGAAACAGTTAGAATGGTGTAGTGAAGCGCCTTTTTACACTCTTGGTCCTTTGACTACTGATATTGCCCCTGGCTATGATCACATCACCTCTGCAATTGGTGCTGCAAATATTGGGGCACTTGGTACAGCTCTTCTCTGTTATGTGACTCCAAAAGAACATCTTGGGTTGCCAAACCGGGATGACGTGAAGGCTGGCGTTATAGCTTACAAGATTGCGGCTCATGCTGCTGATTTAGCCAAAGGCCATCCATATGCTCAAGCTTGGGATGATGAATTGAGCAAGGCAAGATTTGAGTTCCGATGGATGGACCAGTTTGCTTTGTCATTGGATCCGATGACAGCCACGTCCTTCCATGACGAAACCCTACCGGCAGATGGTGCGAAAGTGGCCCATTTCTGCTCAATGTGTGGCCCTAAATTCTGCTCTATGAAGATTACAGAGGATGTGAGGAAGTATGCTGCGGAACATGGCTATGGAACTGATGAAGCTTTGCAGCGTGGGATGGATGCTATGAGTGCTGAATTTCAAGCTGCCAAGAAGACCATCAGTGGGGAGCAACATGGTGAAGCTGGTGGAGAGATTTACTTGCCAGAAGCTTACGTTAGAACCAAGAGGACTACTTAATGGAGCAAATCAGTTGGAAGAACTTGTAGCTAGCTTCCCAACTGGCTTATCTGAGTGTGGAGAAGCATTATCAAGCCTTAGGAGTAGGAGAACGAGTACTGTTTGTGATGAATGTCTATGGTTTAAGAAATCTGTCTTTAGTCAACTTGTGTGTTTTGTTATTCAGTTCTCAGCAATAAACTGCTCTGGCAATCTAGTTTCATGTTCAATGCCATCTTTATCTTTTGGGCTATTTTATTAACACCATAGATGCACAAGGGGTGCCTGAATCTGCACGAGCTCCGGCTATCAAG

Coding sequences of Glyma11g26470

Limit To All Plant Sequences

>Glyma11g26470.2   sequence type=CDS   gene model=Glyma11g26470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATCACTTCATGCTAATGTGACATCAGTTGTTTACAACAGTGGCAACCGTGTTTCTCAATCGAAATTTGCAAGCTCTTCCTTCTTGTCTGGGTTCGATGTTGTTGGTCGTGCTTCAAGTGCTTGGAAGAAGGAACTTGTCCCATCTTCCATTTCCTTGGTGCCTAGAGCCACCCTAACATTTGATCCCCCAACTACCAATTCAGACATAACCAAGCAAAAGAAGCACACTCTTGACCCTGCTTCTCCAGATTTTCTTCCTCTTCCTTCATTTGAACAGTGCTTTCCAAAGAGCACCAAAGAACACAGGGAAGTCACTCATGAAGAAACTGGTCATGTGCTCAAAGTTCCCTTTCGTCGAGTTCACCTGTCTGGGGAAGCAGGACACTTTGATACCTATGACACTAGCGGTCCCCAAAATGTAAACCCAAGGACAGGACTCCCAAAATTGCGCGGAGGGTGGGTTGATAGGAGGGAGAAACTGGGTTATCCAAGATTCACTCAGATGTACTACGCTAAGCAAGGAATCATCACTGAGGAGATGCTTTACTGTGCCACTCGTGAGAACCTTGACCCAGAGTTTGTGAGGTCAGAAGTTGCTCGTGGACGTGCTATCATCCCTTCGAACAAGAAACACTTGGAGTTAGAGCCCATGATAGTTGGAAGAAACTTTTTGGTAAAAGTAAATGCCAACATTGGGAATTCTGCCGTTGCTAGCTCTATAGAAGAGGAAGTTTACAAGGTTCAATGGGCAACTATGTGGGGAGCAGATACTGCCATGGATCTCTCGACTGGTCGCCACATCCATGAAACTCGAGAGTGGATCCTACGCAACTCTGCTGTACCAATTGGGACTGTGCCTATTTATCAAGCACTTGAAAAAGTTAATGGGATTGCTGAGGATCTTAACTGGAAGGTTTTCAGGGACACCCTGATTGAACAAGCTGAGCAGGGTGTGGATTACTTCACCATCCATGCAGGAGTTCTTCTGAGATACGTTCCATTAACGGCTAAGCGCATGACAGGAATAGTCTCAAGAGGAGGGTCTATTCATGCAAAGTGGTGCTTAGCTTATCACAAAGAGAATTTTGCTTATGAGCACTGGGATGAGATACTTGACATCTGCAATCAGTATGATGTGGCCCTATCCATTGGTGATGGGCTAAGACCTGGATCCATCTATGATGCAAATGACACAGCTCAGTTCGCCGAACTCTTGACACAAGGAGAATTGACCCGTAGAGCATGGGAGAAGGATGTACAGGTGATGAATGAAGGACCTGGACATGTCCCAATGCACAAGATTCCTGAAAACATGCAGAAACAGTTAGAATGGTGTAGTGAAGCGCCTTTTTACACTCTTGGTCCTTTGACTACTGATATTGCCCCTGGCTATGATCACATCACCTCTGCAATTGGTGCTGCAAATATTGGGGCACTTGGTACAGCTCTTCTCTGTTATGTGACTCCAAAAGAACATCTTGGGTTGCCAAACCGGGATGACGTGAAGGCTGGCGTTATAGCTTACAAGATTGCGGCTCATGCTGCTGATTTAGCCAAAGGCCATCCATATGCTCAAGCTTGGGATGATGAATTGAGCAAGGCAAGATTTGAGTTCCGATGGATGGACCAGTTTGCTTTGTCATTGGATCCGATGACAGCCACGTCCTTCCATGACGAAACCCTACCGGCAGATGGTGCGAAAGTGGCCCATTTCTGCTCAATGTGTGGCCCTAAATTCTGCTCTATGAAGATTACAGAGGATGTGAGGAAGTATGCTGCGGAACATGGCTATGGAACTGATGAAGCTTTGCAGCGTGGGATGGATGCTATGAGTGCTGAATTTCAAGCTGCCAAGAAGACCATCAGTGGGGAGCAACATGGTGAAGCTGGTGGAGAGATTTACTTGCCAGAAGCTTACGTTAGAACCAAGAGGACTACTTAA

>Glyma11g26470.3   sequence type=CDS   gene model=Glyma11g26470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATCACTTCATGCTAATGTGACATCAGTTGTTTACAACAGTGGCAACCGTGTTTCTCAATCGAAATTTGCAAGCTCTTCCTTCTTGTCTGGGTTCGATGTTGTTGGTCGTGCTTCAAGTGCTTGGAAGAAGGAACTTGTCCCATCTTCCATTTCCTTGGTGCCTAGAGCCACCCTAACATTTGATCCCCCAACTACCAATTCAGACATAACCAAGCAAAAGAAGCACACTCTTGACCCTGCTTCTCCAGATTTTCTTCCTCTTCCTTCATTTGAACAGTGCTTTCCAAAGAGCACCAAAGAACACAGGGAAGTCACTCATGAAGAAACTGGTCATGTGCTCAAAGTTCCCTTTCGTCGAGTTCACCTGTCTGGGGAAGCAGGACACTTTGATACCTATGACACTAGCGGTCCCCAAAATGTAAACCCAAGGACAGGACTCCCAAAATTGCGCGGAGGGTGGGTTGATAGGAGGGAGAAACTGGGTTATCCAAGATTCACTCAGATGTACTACGCTAAGCAAGGAATCATCACTGAGGAGATGCTTTACTGTGCCACTCGTGAGAACCTTGACCCAGAGTTTGTGAGGTCAGAAGTTGCTCGTGGACGTGCTATCATCCCTTCGAACAAGAAACACTTGGAGTTAGAGCCCATGATAGTTGGAAGAAACTTTTTGGTAAAAGTAAATGCCAACATTGGGAATTCTGCCGTTGCTAGCTCTATAGAAGAGGAAGTTTACAAGGTTCAATGGGCAACTATGTGGGGAGCAGATACTGCCATGGATCTCTCGACTGGTCGCCACATCCATGAAACTCGAGAGTGGATCCTACGCAACTCTGCTGTACCAATTGGGACTGTGCCTATTTATCAAGCACTTGAAAAAGTTAATGGGATTGCTGAGGATCTTAACTGGAAGGTTTTCAGGGACACCCTGATTGAACAAGCTGAGCAGGGTGTGGATTACTTCACCATCCATGCAGGAGTTCTTCTGAGATACGTTCCATTAACGGCTAAGCGCATGACAGGAATAGTCTCAAGAGGAGGGTCTATTCATGCAAAGTGGTGCTTAGCTTATCACAAAGAGAATTTTGCTTATGAGCACTGGGATGAGATACTTGACATCTGCAATCAGTATGATGTGGCCCTATCCATTGGTGATGGGCTAAGACCTGGATCCATCTATGATGCAAATGACACAGCTCAGTTCGCCGAACTCTTGACACAAGGAGAATTGACCCGTAGAGCATGGGAGAAGGATGTACAGGTGATGAATGAAGGACCTGGACATGTCCCAATGCACAAGATTCCTGAAAACATGCAGAAACAGTTAGAATGGTGTAGTGAAGCGCCTTTTTACACTCTTGGTCCTTTGACTACTGATATTGCCCCTGGCTATGATCACATCACCTCTGCAATTGGTGCTGCAAATATTGGGGCACTTGGTACAGCTCTTCTCTGTTATGTGACTCCAAAAGAACATCTTGGGTTGCCAAACCGGGATGACGTGAAGGCTGGCGTTATAGCTTACAAGATTGCGGCTCATGCTGCTGATTTAGCCAAAGGCCATCCATATGCTCAAGCTTGGGATGATGAATTGAGCAAGGCAAGATTTGAGTTCCGATGGATGGACCAGTTTGCTTTGTCATTGGATCCGATGACAGCCACGTCCTTCCATGACGAAACCCTACCGGCAGATGGTGCGAAAGTGGCCCATTTCTGCTCAATGTGTGGCCCTAAATTCTGCTCTATGAAGATTACAGAGGATGTGAGGAAGTATGCTGCGGAACATGGCTATGGAACTGATGAAGCTTTGCAGCGTGGGATGGATGCTATGAGTGCTGAATTTCAAGCTGCCAAGAAGACCATCAGTGGGGAGCAACATGGTGAAGCTGGTGGAGAGATTTACTTGCCAGAAGCTTACGTTAGAACCAAGAGGACTACTTAA

Predicted protein sequences of Glyma11g26470

Limit To All Plant Sequences

>Glyma11g26470.2   sequence type=predicted peptide   gene model=Glyma11g26470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASLHANVTSVVYNSGNRVSQSKFASSSFLSGFDVVGRASSAWKKELVPSSISLVPRATLTFDPPTTNSDITKQKKHTLDPASPDFLPLPSFEQCFPKSTKEHREVTHEETGHVLKVPFRRVHLSGEAGHFDTYDTSGPQNVNPRTGLPKLRGGWVDRREKLGYPRFTQMYYAKQGIITEEMLYCATRENLDPEFVRSEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYKVQWATMWGADTAMDLSTGRHIHETREWILRNSAVPIGTVPIYQALEKVNGIAEDLNWKVFRDTLIEQAEQGVDYFTIHAGVLLRYVPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWEKDVQVMNEGPGHVPMHKIPENMQKQLEWCSEAPFYTLGPLTTDIAPGYDHITSAIGAANIGALGTALLCYVTPKEHLGLPNRDDVKAGVIAYKIAAHAADLAKGHPYAQAWDDELSKARFEFRWMDQFALSLDPMTATSFHDETLPADGAKVAHFCSMCGPKFCSMKITEDVRKYAAEHGYGTDEALQRGMDAMSAEFQAAKKTISGEQHGEAGGEIYLPEAYVRTKRTT*

>Glyma11g26470.3   sequence type=predicted peptide   gene model=Glyma11g26470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASLHANVTSVVYNSGNRVSQSKFASSSFLSGFDVVGRASSAWKKELVPSSISLVPRATLTFDPPTTNSDITKQKKHTLDPASPDFLPLPSFEQCFPKSTKEHREVTHEETGHVLKVPFRRVHLSGEAGHFDTYDTSGPQNVNPRTGLPKLRGGWVDRREKLGYPRFTQMYYAKQGIITEEMLYCATRENLDPEFVRSEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYKVQWATMWGADTAMDLSTGRHIHETREWILRNSAVPIGTVPIYQALEKVNGIAEDLNWKVFRDTLIEQAEQGVDYFTIHAGVLLRYVPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWEKDVQVMNEGPGHVPMHKIPENMQKQLEWCSEAPFYTLGPLTTDIAPGYDHITSAIGAANIGALGTALLCYVTPKEHLGLPNRDDVKAGVIAYKIAAHAADLAKGHPYAQAWDDELSKARFEFRWMDQFALSLDPMTATSFHDETLPADGAKVAHFCSMCGPKFCSMKITEDVRKYAAEHGYGTDEALQRGMDAMSAEFQAAKKTISGEQHGEAGGEIYLPEAYVRTKRTT*

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