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Integrating Genetics and Genomics to Advance Soybean Research




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Report for Sequence Feature Glyma11g26230

Feature Type:gene_model
Chromosome:Gm11
Start:25108260
stop:25109255
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G50740AT Annotation by Michelle Graham. TAIR10: Heavy metal transport/detoxification superfamily protein | chr5:20637148-20637847 REVERSE LENGTH=162 SoyBaseE_val: 4.00E-26ISS
GO:0030001GO-bp Annotation by Michelle Graham. GO Biological Process: metal ion transport SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0046872GO-mf Annotation by Michelle Graham. GO Molecular Function: metal ion binding SoyBaseN/AISS
KOG1603 KOG Copper chaperone JGI ISS
PTHR22814Panther COPPER TRANSPORT PROTEIN ATOX1-RELATED JGI ISS
PTHR22814:SF52Panther SUBFAMILY NOT NAMED JGI ISS
PF00403PFAM Heavy-metal-associated domain JGI ISS
UniRef100_B9RAC5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Metal ion binding protein, putative n=1 Tax=Ricinus communis RepID=B9RAC5_RICCO SoyBaseE_val: 3.00E-25ISS
UniRef100_I1LLI7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1LLI7_SOYBN SoyBaseE_val: 4.00E-68ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g26230 not represented in the dataset

Glyma11g26230 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma11g26230.1   sequence type=CDS   gene model=Glyma11g26230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAAAGAAAGACAAAGGAAACAAAGAAGAAGCCAAAGATAAAAAGAAGAAAGAGGAGCCACCACCAGAAATAGTGCTCAAAGTTGATATGCACTGTGAGGCCTGTGCAAGGAAAGTTGCAAAAGCATTGAAAGGATTCCAAGGAGTGGAAGAGGTAAGTGCGGATAGCAGGACAAACAAAGTGGTAGTGAAAGGAAAGACAACAGACCCCATAAAGGTGTGTGAGAGGCTACAAAAGAAAAGTGGTAAGAAACTGGAGCTGATTTCACCCTTGCCTAAACCTCAGAGGAGAAAGAAGAACCACCCAAAGAAGAACCACCAAAAGTGGAGAAAAAAATATGAG

>Glyma11g26230.1   sequence type=predicted peptide   gene model=Glyma11g26230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEKKDKGNKEEAKDKKKKEEPPPEIVLKVDMHCEACARKVAKALKGFQGVEEVSADSRTNKVVVKGKTTDPIKVCERLQKKSGKKLELISPLPKPQRRKKNHPKKNHQKWRKKYE







Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
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