Glyma11g26120 - SoyBase

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Report for Sequence Feature Glyma11g26120

Feature Type:	gene_model
Chromosome:	Gm11
Start:	24926288
stop:	24926949
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g26120

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G48670	AT	Annotation by Michelle Graham. TAIR10: AGAMOUS-like 80 \| chr5:19738825-19739790 REVERSE LENGTH=321	SoyBase	E_val: 3.00E-35	ISS
GO:0009612	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to mechanical stimulus	SoyBase	N/A	ISS
GO:0019722	GO-bp	Annotation by Michelle Graham. GO Biological Process: calcium-mediated signaling	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0043078	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: polar nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0046983	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity	SoyBase	N/A	ISS
PTHR11945	Panther	MADS BOX PROTEIN	JGI		ISS
PTHR11945:SF69	Panther	AGL80/FEM111 (AGAMOUS-LIKE80), DNA BINDING / TRANS	JGI		ISS
PF00319	PFAM	SRF-type transcription factor (DNA-binding and dimerisation domain)	JGI		ISS
UniRef100_G7J8R0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Agamous-like MADS-box protein AGL80 n=1 Tax=Medicago truncatula RepID=G7J8R0_MEDTR	SoyBase	E_val: 2.00E-36	ISS
UniRef100_UPI000233D5A7	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233D5A7 related cluster n=1 Tax=unknown RepID=UPI000233D5A7	SoyBase	E_val: 5.00E-121	ISS

Expression Patterns of Glyma11g26120

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma11g26120 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g159700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g26120

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma11g26120

Limit To All Plant Sequences

>Glyma11g26120.2   sequence type=CDS   gene model=Glyma11g26120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGAGAAAGAAGGTTGACTTTACATACATAAGCAATCCGAGGAAGAGGAAGGCTGCATTGAAGAAAAGGAAAAATGGTTTGCTGAAAAAGATTGATGAAATCACAACCCTTTGTGGCATTCAGGCATGCGCTATAATTTATACTCCAGACGAACCTGAGCCTGAGGTTTGGCCATCCAACCAAGGAGTGGAAAGTGTGATTTTCAACTTTAGGGGAGTTTCTGAATCGGCACGAAACAAAAGAATGTTTTGTCAAGAGTCACTTTTAATGAAAAACATAACCTTAGCACAAGGGCAGCTCAAGAAACTTAGGGATGAAAACAGAAAGAAGGAGATAGGCCTTTTCTTGTGTCAATACTTTGCTGGTGGTAACAACCTTGGCAAGTGCAACATTATTGATCTGAATGATATCACGTTCTTGGCTGATAAAAAATTGGAGGAGATTACAAAGAAAATTGAAATGCTCCTTGTCCAAGAGGTGACACCAGCTACTGAAAATGAGGATAAACCGTGA

Predicted protein sequences of Glyma11g26120

Limit To All Plant Sequences

>Glyma11g26120.2   sequence type=predicted peptide   gene model=Glyma11g26120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MARKKVDFTYISNPRKRKAALKKRKNGLLKKIDEITTLCGIQACAIIYTPDEPEPEVWPSNQGVESVIFNFRGVSESARNKRMFCQESLLMKNITLAQGQLKKLRDENRKKEIGLFLCQYFAGGNNLGKCNIIDLNDITFLADKKLEEITKKIEMLLVQEVTPATENEDKP*

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