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Report for Sequence Feature Glyma11g25960

Feature Type:gene_model
Chromosome:Gm11
Start:24679799
stop:24681199
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G07010AT Annotation by Michelle Graham. TAIR10: sulfotransferase 2A | chr5:2174960-2176039 REVERSE LENGTH=359 SoyBaseE_val: 3.00E-150ISS
GO:0009611GO-bp Annotation by Michelle Graham. GO Biological Process: response to wounding SoyBaseN/AISS
GO:0009694GO-bp Annotation by Michelle Graham. GO Biological Process: jasmonic acid metabolic process SoyBaseN/AISS
GO:0009695GO-bp Annotation by Michelle Graham. GO Biological Process: jasmonic acid biosynthetic process SoyBaseN/AISS
GO:0009753GO-bp Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus SoyBaseN/AISS
GO:0009867GO-bp Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0008146GO-mf Annotation by Michelle Graham. GO Molecular Function: sulfotransferase activity SoyBaseN/AISS
GO:0080131GO-mf Annotation by Michelle Graham. GO Molecular Function: hydroxyjasmonate sulfotransferase activity SoyBaseN/AISS
KOG1584 KOG Sulfotransferase JGI ISS
PTHR11783Panther SULFOTRANSFERASE (SULT) JGI ISS
PTHR11783:SF1Panther SULFOTRANSFERASE-RELATED JGI ISS
PF00685PFAM Sulfotransferase domain JGI ISS
UniRef100_G7IVU2UniRef Annotation by Michelle Graham. Most informative UniRef hit: Sulfotransferase n=1 Tax=Medicago truncatula RepID=G7IVU2_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI000233D5A2UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233D5A2 related cluster n=1 Tax=unknown RepID=UPI000233D5A2 SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.11g158900 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma11g25960.1   sequence type=CDS   gene model=Glyma11g25960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCTAACAAAGTTTACAAAAATCCAATCAGGTGGTGGTGGTGGAGAGGAAGTAATTGAAGATGACAAAATAAGCCAACAAAGTACGGAGCTAATTCTCTCCCTTCCAAGAGAGAAAGGTTGGAGAACACCATATGTGTATCTATTCCAAGGGTTTTGGTGCCAACCACATGAAATACAAGCCATAATCACTTTTCAAAAGCACTTTCAAGCCAAGGACAGTGATGTTCTTGTGGCCACTGTGCCAAAATCAGGCACCACATGGTTGAAGGCCCTTACCTTTGCCACTGTGAGCCGCCACAACTTTTCTTCCTTCAACAAGAACCACCCTCTTCTCAATTTCAATCCCCATGACCTTGTACCCTTTTTTGAGTACACAGTTTATGATAAGCATGACAAGGTTCCTGACTTGTCCAACATGCATGAGCCAAGACTCTTTGGAACTCATGTTCCATTTGCTTCATTGTCCAAATCAATCAAAGAGTCCAATTGCAAGGTAATCTACATCTGCAGGAACCCTTTTGACACTTTCATCTCTTCTTGGTTTTTTGCCAACAAAATCAAGCCAGGGTCACTACCCACATTGGCACTTGATGAGGCTTTTGAAATGTACTGTAAAGGGGTGGTTGGTTTTGGCCCATTTTGGACTCACATGCTTGGTTATTGGAAGGAGAGCATAGAGAAACCAAACAAGGTTCTGTTCTTGATGTATGAGGACCTCAAAGGGGACATCAATTTTCACCTGAAAAGGGTAGCTGAGTTCTTGGGTTGTCCTTTCACCTTGGAGGAAGAAAATAGAGGTGTGATTGAGAACATAATCAAGTTGTGTAGCTTTCAGAAAATGAAGGAATTAGAGGTAAATAAGTCTGGTACATTTGGCAGGAACTTTGAAAATAAGTTTTTGTTCAGGAAGGGTGAAATAGGGGATTGGGTTAATTATCTTTCGCCTTCGATGGCGCAGAAATTAACCAAAGTCATGGAAGACAAGTTAGGTGGGTCTGGTTTGACATTTAGAATGAACTCTTAA

>Glyma11g25960.1   sequence type=predicted peptide   gene model=Glyma11g25960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALTKFTKIQSGGGGGEEVIEDDKISQQSTELILSLPREKGWRTPYVYLFQGFWCQPHEIQAIITFQKHFQAKDSDVLVATVPKSGTTWLKALTFATVSRHNFSSFNKNHPLLNFNPHDLVPFFEYTVYDKHDKVPDLSNMHEPRLFGTHVPFASLSKSIKESNCKVIYICRNPFDTFISSWFFANKIKPGSLPTLALDEAFEMYCKGVVGFGPFWTHMLGYWKESIEKPNKVLFLMYEDLKGDINFHLKRVAEFLGCPFTLEEENRGVIENIIKLCSFQKMKELEVNKSGTFGRNFENKFLFRKGEIGDWVNYLSPSMAQKLTKVMEDKLGGSGLTFRMNS*







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