Report for Sequence Feature Glyma11g25950
Feature Type: gene_model
Chromosome: Gm11
Start: 24677182
stop: 24678171
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma11g25950
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G28230 AT
Annotation by Michelle Graham. TAIR10: unknown protein; Has 444 Blast hits to 358 proteins in 107 species: Archae - 0; Bacteria - 20; Metazoa - 179; Fungi - 26; Plants - 38; Viruses - 2; Other Eukaryotes - 179 (source: NCBI BLink). | chr4:13995990-13997198 REVERSE LENGTH=402
SoyBase E_val: 3.00E-50 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
UniRef100_I1LLH5 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LLH5_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma11g25950
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma11g25950
Paralog Evidence Comments
Glyma04g16640 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma11g25950 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.11g158800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma11g25950
Coding sequences of Glyma11g25950
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma11g25950.1 sequence type=CDS gene model=Glyma11g25950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAACGACATTCAAGTGTGGAACAACGCCGCGTTCGACGGCAACGAAGAAGACTCCTTCTTACCGATGAAGACTTCTTGGTCTTCCTCCGAGTGCACCAAAGAAAACCTGAGCCCGCCCGCACCCGATAATTTATCCTTCAAGAAAAGCACCACCGCCACAAAGAAAAACCCCAAGGGTTTCGGTTTCGGTTCCGATGATAACAAAAACATCGACGACGAGATCGAAGAGATCGAGCTTGAGATAAAGCGCCTTACCACGCGCCTCGACGCGCTCCGTCTCGAGAAGGCGAAGCGGGGGAAGCGCGTGGTGATGGGCAGAGTCGTCCCCGCGAAGTTCATGGAGCCGCGCCCAAGCGCCGTCGTTTCAAGAAAACCCGAAGAAACGCCGAAGACAAAAGTTAGGGTTAGTAGTAGTAGTAACAATAATAATAATGCGTGGCGGCGAGGGATGAGTCTTGGACCGAATGAGATTGCGGCGGCGACGCCGGCCACCACCTTGCAGAGTCGCCGGAAATCGTGCTTCTGGAAGATTCCTGAGATCGGCGAGGAATCGAGGGCAAAAACCACCGTTGGGAGAGTGAAGAAGAAGGAGGGAAATTCGGTGATTCAGGTTCAGGGGAAGAGGCTATTTGAGAAGGAGAAAGTGAAATCGGTGTGTGAGAGTGGCAAGAAGGGGTTGTTGAAGCAGGGGAGGATGGTGGCGAGTAGGTATAATAGTGATGTGAGGAAGAGATCGTTGCCGGAAGGAGGGACTGAGATTAGGGTTAAGAAGAGGTGGGAGATTCCAAAGAACGGCGAGGAAGAGGCGGAGGCCGTGGCGGTCATGCTTCCAAAGATTAAGATGGTGAAGTGTTTGAATGAGAGTCCCAGAGATTCCGGTGCAGCAAAAAGAGTTGCTGAGTTGGGGGGGAGGAGGTCCTATTTCAACACTGATGAGAAAGATGTTTGTCAGATTCTGAATTTTGCTGAAGAAGAAGAAGGGCAATGA
Predicted protein sequences of Glyma11g25950
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma11g25950.1 sequence type=predicted peptide gene model=Glyma11g25950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MNDIQVWNNAAFDGNEEDSFLPMKTSWSSSECTKENLSPPAPDNLSFKKSTTATKKNPKGFGFGSDDNKNIDDEIEEIELEIKRLTTRLDALRLEKAKRGKRVVMGRVVPAKFMEPRPSAVVSRKPEETPKTKVRVSSSSNNNNNAWRRGMSLGPNEIAAATPATTLQSRRKSCFWKIPEIGEESRAKTTVGRVKKKEGNSVIQVQGKRLFEKEKVKSVCESGKKGLLKQGRMVASRYNSDVRKRSLPEGGTEIRVKKRWEIPKNGEEEAEAVAVMLPKIKMVKCLNESPRDSGAAKRVAELGGRRSYFNTDEKDVCQILNFAEEEEGQ*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
