SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G35040 | AT | Annotation by Michelle Graham. TAIR10: AICARFT/IMPCHase bienzyme family protein | chr2:14765347-14768269 REVERSE LENGTH=596 | SoyBase | E_val: 0 | ISS |
| GO:0006164 | GO-bp | Annotation by Michelle Graham. GO Biological Process: purine nucleotide biosynthetic process | SoyBase | N/A | ISS |
| GO:0009220 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pyrimidine ribonucleotide biosynthetic process | SoyBase | N/A | ISS |
| GO:0009409 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cold | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009536 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plastid | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0010319 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: stromule | SoyBase | N/A | ISS |
| GO:0003937 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: IMP cyclohydrolase activity | SoyBase | N/A | ISS |
| GO:0004643 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phosphoribosylaminoimidazolecarboxamide formyltransferase activity | SoyBase | N/A | ISS |
| KOG2555 | KOG | AICAR transformylase/IMP cyclohydrolase/methylglyoxal synthase | JGI | ISS | |
| PTHR11692 | Panther | BIFUNCTIONAL PURINE BIOSYNTHESIS PROTEIN | JGI | ISS | |
| PF01808 | PFAM | AICARFT/IMPCHase bienzyme | JGI | ISS | |
| PF02142 | PFAM | MGS-like domain | JGI | ISS | |
| UniRef100_I1LLH3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LLH3_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q84XA4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Aminoimidazolecarboximide ribonucleotide transformylase/inosine monophosphate cyclohydrolase n=1 Tax=Vigna unguiculata RepID=Q84XA4_VIGUN | SoyBase | E_val: 0 | ISS |
|
Glyma11g25900 not represented in the dataset |
Glyma11g25900 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma04g16670 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g158400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g25900.1 sequence type=CDS gene model=Glyma11g25900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTTGTGTTGGGTGTTTCTTCCTCCTCCTTCGCCGCCGCCGCCGCCTCCGCCGCTGCAACCACCACCACCTCCACTCACCACCTTCTCTGTGGAACCCTTCACTCTGCTTCTTTCCTCTCAACTACCCATCCCTTTCCCACAACTTCGTTGCGGTCATCTTCACTGCACTTCAGGTGTGTTCCCATCAGAGCCATGGCTGAGATTGATACTATATCAGTGTCAAAATCTGCTTCTTCTTCTGCTCCAGGCAGCAAGCAAGCCTTGATATCATTGTCAGACAAGAAGGGTCTTGCATTTGTTGGGAATGGGCTCCAGGAATTAGGATACTCTATTGTTTCAACTGGAGGAACAGCTTCTGCATTAGAGAGTGCTGGAGTAGCTGTTACTAAAGTTGAACAGCTTACTAAGTTCCCTGAAATGCTTGATGGTCGCGTCAAAACTTTGCACCCTAACATACATGGGGGTATCCTGGCTCGAAGGGACCAAAAACATCATATCGAAGCCCTCAGTACTCATGGGATTGGTACTTTTGATGTTGTGGTGGTGAACCTGTACCCATTTTACGATAAAGTCACATCAGCTGGGGGCATTGAATTTGAGGATGGAATTGAAAATGTTGACATTGGTGGTCCAGCCATGATTAGAGCTGCTGCAAAGAACCACAAGGATGTTTTGATAGTGGTTGATACAGAAGACTACCCTGCCCTTCTGGAATTTCTTAAAGGAAACCAGGATGATATAAAGTTCAGGCTAAAGCTTGCATGGAAAGCTTTTCAACATGTTGCTTCCTATGACTCAGCAGTATCTGAGTGGTTGTGGAAACAGAGTGTGGGAGATAAATTCCCTCCTAGCTTGACAGTGCCCCTCTCTCTCAAAAGTCCTCTCCGTTATGGTGAAAATCCTCATCAAAAAGCTGCATTCTATGTTGACAAAAGCCTTTCTGAAGTTAATGCTGGTGGAATTGCTACAGCCATCCAACACCATGGAAAGGAGATGTCATATAATAACTACTTGGATGCTGATGCTGCTTGGAACTGTGTATGCGAGTTTAGGAAACCCACGTGTGTAGTAGTAAAGCATACTAATCCATGTGGGGTAGCATCACGTGATGATATTCTTGAAGCCTACAGACTAGCTGTTAAAGCTGATCCCGTGAGTGCATTTGGTGGAATTGTAGCTTTCAATGTGGAAATTGATGAGGCACTTGCTAAAGAAATTCGAGAATTTAGAAGCCCCACAGATGGGGAGACAAGGATGTTTTATGAAATAGTGGTTGCGCCCAGCTATACAGAGAAGGGACTTGAGATTCTCTGTGGAAAGTCTAAGACTCTAAGGATTCTTGAAGCGAAAAAGAATGAAGCTGGAAAGCTTTCACTCAGACAAGTTGGTGGAGGATGGTTAGCTCAGGATTCAGATGACTTAACCCCACAGGACATCAAGTTCAACGTAGTCTCTGAGAAGGCTCCACAGGATGATGAGCTTTGTGATGCGGAGTTCGCATGGTTGTGTGTGAAGCATGTCAAAAGCAATGCTATTGTGATAGCTAAGAACAATTGCATGTTAGGTATGGGAAGTGGGCAACCAAACCGTGTCGAGAGTTTGAGAATTGCAATAAGGAAAGCTGGAGATGATGTTAAAGGAGCAGCCTTGGTCAGTGATGCCTTCTTCCCATTTGCATGGAAAGATGCTGTGGAAGAAGCATGTGAGAGCGGAATCGGTGTTATTGCAGAACCAGGTGGGAGTATCAGAGACCAGGATGCCATAGACTGTTGTAACAAGTATGGTGTTTCACTACTCTTTACCAATGTGAGGCACTTTAGGCACTAA
>Glyma11g25900.1 sequence type=predicted peptide gene model=Glyma11g25900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFVLGVSSSSFAAAAASAAATTTTSTHHLLCGTLHSASFLSTTHPFPTTSLRSSSLHFRCVPIRAMAEIDTISVSKSASSSAPGSKQALISLSDKKGLAFVGNGLQELGYSIVSTGGTASALESAGVAVTKVEQLTKFPEMLDGRVKTLHPNIHGGILARRDQKHHIEALSTHGIGTFDVVVVNLYPFYDKVTSAGGIEFEDGIENVDIGGPAMIRAAAKNHKDVLIVVDTEDYPALLEFLKGNQDDIKFRLKLAWKAFQHVASYDSAVSEWLWKQSVGDKFPPSLTVPLSLKSPLRYGENPHQKAAFYVDKSLSEVNAGGIATAIQHHGKEMSYNNYLDADAAWNCVCEFRKPTCVVVKHTNPCGVASRDDILEAYRLAVKADPVSAFGGIVAFNVEIDEALAKEIREFRSPTDGETRMFYEIVVAPSYTEKGLEILCGKSKTLRILEAKKNEAGKLSLRQVGGGWLAQDSDDLTPQDIKFNVVSEKAPQDDELCDAEFAWLCVKHVKSNAIVIAKNNCMLGMGSGQPNRVESLRIAIRKAGDDVKGAALVSDAFFPFAWKDAVEEACESGIGVIAEPGGSIRDQDAIDCCNKYGVSLLFTNVRHFRH*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
