Glyma11g25780 - SoyBase

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Report for Sequence Feature Glyma11g25780

Feature Type:	gene_model
Chromosome:	Gm11
Start:	24561221
stop:	24567169
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g25780

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G12270	AT	Annotation by Michelle Graham. TAIR10: protein arginine methyltransferase 3 \| chr3:3910642-3913122 FORWARD LENGTH=601	SoyBase	E_val: 0	ISS
GO:0000741	GO-bp	Annotation by Michelle Graham. GO Biological Process: karyogamy	SoyBase	N/A	ISS
GO:0001510	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA methylation	SoyBase	N/A	ISS
GO:0006479	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein methylation	SoyBase	N/A	ISS
GO:0006606	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein import into nucleus	SoyBase	N/A	ISS
GO:0009220	GO-bp	Annotation by Michelle Graham. GO Biological Process: pyrimidine ribonucleotide biosynthetic process	SoyBase	N/A	ISS
GO:0009560	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo sac egg cell differentiation	SoyBase	N/A	ISS
GO:0042991	GO-bp	Annotation by Michelle Graham. GO Biological Process: transcription factor import into nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0008168	GO-mf	Annotation by Michelle Graham. GO Molecular Function: methyltransferase activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
GO:0008276	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein methyltransferase activity	SoyBase	N/A	ISS
KOG1499	KOG	Protein arginine N-methyltransferase PRMT1 and related enzymes	JGI		ISS
PTHR11006	Panther	PROTEIN ARGININE N-METHYLTRANSFERASE	JGI		ISS
PTHR11006:SF14	Panther	PROTEIN ARGININE N-METHYLTRANSFERASE 3	JGI		ISS
PF08241	PFAM	Methyltransferase domain	JGI		ISS
UniRef100_G7IYP7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein arginine methyltransferase n=1 Tax=Medicago truncatula RepID=G7IYP7_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1LLH0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LLH0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma11g25780

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g25780 not represented in the dataset	Glyma11g25780 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma11g25780 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g157700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g25780

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma11g25780

Limit To All Plant Sequences

>Glyma11g25780.1   sequence type=CDS   gene model=Glyma11g25780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATTCGGCAACTACAAACAAAAGCAACAACAAGAAGAAGAAGAACAAGAACACAGAATGGAAGAAGACGAGGACGAAAGCGAAGAAGAAGAGGAACAATTTTGGGACGATTGGGAAGGAGAAGACGAAGAAGGAGAGCAGCGAGACTCTGAATTCGTGTGTCTCTTCTGTGAATCCCGGTACAGCTCGTGCGGTTCCTTGTTCGACCACTGCGCCTCCCTTCACCGCTTTGATTTCCACGCGATTAGAACAACTCTTAGCTTGGATTTCTATGCCTCCTTCAAGCTCATTAACTTCATCCGCTCTCTGGTGGCAGAGAACAGATGTTGGAGTTGTGGATTAACATGCCAGTCCAACCGTGATCTTCAGAATCATTTGCATGATTTAGTTGACTTTAATGAGATAAAGACTTTGTGGAATGATGATAGGTATCTGATACCTTTCATGGAAGATGATTCACTGTTGTACAGTTTTGGTGATTGTGACGAAGAAGGTGAAGATGAACAAATTACTCCAATTGATGAAGATCTTATAAAGGATCTAATGAACATTGAAGAGAGTATCCATGACGATCAAGATGTTGTGAATAAAATGGTAGTTGATGATGACAAACATGAGATTGCTTCTGTCTCTAATGATCATTTGAACAAGGCTAGTTCTTCAAAGGAACTTATTAATGGGAAGGACTTGTGCTGTGATAAGGATCCAGAAGGACATTTGATGGTTAATTCTCAAAATCACATTGCAAAGCATATTAAGAAGATCAATGAAAGTTATTTTGGCTCTTACAGTTCATTTGGTATCCATCGAGAGATGTTAAGTGACAAGGTGAGAATGGATGCTTATGGCCAAGCAATTTTGAAGAATCCGTCTCTACTAAATAGTGCTGTGGTTATGGATGTAGGTTGTGGAACTGGAATTCTCAGCCTATTTTCAGCAAAAGCTGGTGCTTCAAGGGTTATTGCAGTCGAGGCTAGTGCCAAGATGGCAGCAGTAGCATCTCAGATTGCAAAAGATAATGGTCTTTTGCTGAGTAAAAGCCAAAATGGAGTTGATGGCTTCCAAAAGGGAGTCATAGAAGTGGTTCATGGTATGGTTGAAGAGATTGATAAAACAGTTGAAGTTCAACCTCACAGTGTTGATGTACTGCTAAGTGAATGGATGGGATATTGCCTGCTGTATGAATCCATGCTTGGTTCAGTACTTTATGCACGAGACCGGTGGTTGAAGCCTGGCGGTGCCATTCTTCCTGACACAGCAACTATTTTTGTTGCAGGATTTGGAAAAGGAGCCACAAGTCTTCCTTTTTGGGAAAATGTGTGTGATTTTGACATGTCTTGCATTGGGAAGGAGCTTGTCATAGATGCTGCCCGAATTCCTATAGTTGATGTTGTGGACTCTCAAGATTTAGTTACCTGTTCTGCTATTCTTCAGTCCTTTGACTTGGCAACCATGAAGCCTAATGAAGTGGATTTCACTGCAACTGCTACTTTGGAATTGAAACCAAGTTATTCAGGAACATGCTGCTGGTGTTATGGGGTTGTCCTATGGTTTGATACTGGATTTACAAGCAGATTTTGCCAAGAAACACCAGCTGTGTTATCCACATCCCCTTACATGCCAAGAACACATTGGTCACAGACAATCTTAACCTTTCGAGAACCTATTGCAATGGGATTTGGAAAAGGAAACAGGGGTAAACCAGAAGCAATCGGCACTGAGGTGTATCCTGCTACGAAGATTGATTTACGTGTCAGCATTGTGCGTTCTACTGAGCATCGCAGCATTGATATATCTTTAGAAGCTGCTGGTGTTGAACCTGATGGTCAGAAACGTAGTTGGCCTGCTCAGCTTTTTAATCTGCAGTAG

Predicted protein sequences of Glyma11g25780

Limit To All Plant Sequences

>Glyma11g25780.1   sequence type=predicted peptide   gene model=Glyma11g25780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAFGNYKQKQQQEEEEQEHRMEEDEDESEEEEEQFWDDWEGEDEEGEQRDSEFVCLFCESRYSSCGSLFDHCASLHRFDFHAIRTTLSLDFYASFKLINFIRSLVAENRCWSCGLTCQSNRDLQNHLHDLVDFNEIKTLWNDDRYLIPFMEDDSLLYSFGDCDEEGEDEQITPIDEDLIKDLMNIEESIHDDQDVVNKMVVDDDKHEIASVSNDHLNKASSSKELINGKDLCCDKDPEGHLMVNSQNHIAKHIKKINESYFGSYSSFGIHREMLSDKVRMDAYGQAILKNPSLLNSAVVMDVGCGTGILSLFSAKAGASRVIAVEASAKMAAVASQIAKDNGLLLSKSQNGVDGFQKGVIEVVHGMVEEIDKTVEVQPHSVDVLLSEWMGYCLLYESMLGSVLYARDRWLKPGGAILPDTATIFVAGFGKGATSLPFWENVCDFDMSCIGKELVIDAARIPIVDVVDSQDLVTCSAILQSFDLATMKPNEVDFTATATLELKPSYSGTCCWCYGVVLWFDTGFTSRFCQETPAVLSTSPYMPRTHWSQTILTFREPIAMGFGKGNRGKPEAIGTEVYPATKIDLRVSIVRSTEHRSIDISLEAAGVEPDGQKRSWPAQLFNLQ*

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