SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G43710 | AT | Annotation by Michelle Graham. TAIR10: Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | chr1:16486534-16488298 REVERSE LENGTH=482 | SoyBase | E_val: 7.00E-72 | ISS |
| GO:0006520 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular amino acid metabolic process | SoyBase | N/A | ISS |
| GO:0006580 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ethanolamine metabolic process | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0016831 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: carboxy-lyase activity | SoyBase | N/A | ISS |
| GO:0030170 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: pyridoxal phosphate binding | SoyBase | N/A | ISS |
| PTHR11999 | Panther | GROUP II PYRIDOXAL-5-PHOSPHATE DECARBOXYLASE | JGI | ISS | |
| PTHR11999:SF4 | Panther | gb def: glutamate decarboxylase [caenorhabditis elegans] | JGI | ISS | |
| UniRef100_G7IL93 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Histidine decarboxylase n=1 Tax=Medicago truncatula RepID=G7IL93_MEDTR | SoyBase | E_val: 2.00E-74 | ISS |
| UniRef100_UPI000233D450 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233D450 related cluster n=1 Tax=unknown RepID=UPI000233D450 | SoyBase | E_val: 5.00E-105 | ISS |
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Glyma11g25641 not represented in the dataset |
Glyma11g25641 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g25641.2 sequence type=transcript gene model=Glyma11g25641 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGATTAGTATATAATTTTGACTATGATGCACTCTCTCAACTTCAGCATTTTTCCATCAACAACCCGGGGGATCCTTTCATTGAAAGCAATTATGGTGTCCACTCTAGGCAGTTTGAGGTTGGTGTTTTGGACTGGTTCGCGTGGTTGTGGGAACTCGAGAAAGATGAGTATTGGGGCTATATAACAAACTATGGCACAGAAGGCAATCTTCATGGCATCCTAGTGGGGAGAGAGGTGTTCCCTAATGGGATTTTATATGCCTCACAGGAATCACATTATTCTGTTTTCAAAGCTGCTAGAATGTACATAATGGAATGTGTGAAGATTAACACTCTTTGGTCTGGTGAGATTGATTGTGATGGTTTTGAGGCCAAGCTTCTTTGTCACAAGGACAAGCCAGGAATTGTGGATGTGAACATAGTATGAACCAGATGGTCGAGTAATGCTGGTTGAATTTGAAACACTTCGTTATACGAGACAGGAAGACCAACAAGGACTATTAGGTTATCAATCCCTTTACATGATGCTCAAGAATTTTTGTCTCTACCAACTTCATTATGCTTTTCTAGGAATAGGATAAGAGATTTTGAGCAACCAAACACTCGTGTTATACATATGACTAGCTATAATAATTTATTTCAATAACAAATTTGCAGGTGTAA
>Glyma11g25641.1 sequence type=CDS gene model=Glyma11g25641 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTTTTTTCCCACCTAGAGCATTTTTCCATCAACAACCCGGGGGATCCTTTCATTGAAAGCAATTATGGTGTCCACTCTAGGCAGTTTGAGGTTGGTGTTTTGGACTGGTTCGCGTGGTTGTGGGAACTCGAGAAAGATGAGTATTGGGGCTATATAACAAACTATGGCACAGAAGGCAATCTTCATGGCATCCTAGTGGGGAGAGAGGTGTTCCCTAATGGGATTTTATATGCCTCACAGGAATCACATTATTCTGTTTTCAAAGCTGCTAGAATGTACATAATGGAATGTGTGAAGATTAACACTCTTTGGTCTGGTGAGATTGATTGTGATGGTTTTGAGGCCAAGCTTCTTTGTCACAAGGACAAGCCAGGAATTGTGGATGTGAACATAGGTTCTACATCCATTGTGATGGGGCTTTGTTTGGTCTCATGCTGCCTTTTGTCAAACGTCTTCAAAGTATGA >Glyma11g25641.2 sequence type=CDS gene model=Glyma11g25641 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGATTAGTATATAATTTTGACTATGATGCACTCTCTCAACTTCAGCATTTTTCCATCAACAACCCGGGGGATCCTTTCATTGAAAGCAATTATGGTGTCCACTCTAGGCAGTTTGAGGTTGGTGTTTTGGACTGGTTCGCGTGGTTGTGGGAACTCGAGAAAGATGAGTATTGGGGCTATATAACAAACTATGGCACAGAAGGCAATCTTCATGGCATCCTAGTGGGGAGAGAGGTGTTCCCTAATGGGATTTTATATGCCTCACAGGAATCACATTATTCTGTTTTCAAAGCTGCTAGAATGTACATAATGGAATGTGTGAAGATTAACACTCTTTGGTCTGGTGAGATTGATTGTGATGGTTTTGAGGCCAAGCTTCTTTGTCACAAGGACAAGCCAGGAATTGTGGATGTGAACATAGTATGA
>Glyma11g25641.1 sequence type=predicted peptide gene model=Glyma11g25641 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFFSHLEHFSINNPGDPFIESNYGVHSRQFEVGVLDWFAWLWELEKDEYWGYITNYGTEGNLHGILVGREVFPNGILYASQESHYSVFKAARMYIMECVKINTLWSGEIDCDGFEAKLLCHKDKPGIVDVNIGSTSIVMGLCLVSCCLLSNVFKV* >Glyma11g25641.2 sequence type=predicted peptide gene model=Glyma11g25641 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRLVYNFDYDALSQLQHFSINNPGDPFIESNYGVHSRQFEVGVLDWFAWLWELEKDEYWGYITNYGTEGNLHGILVGREVFPNGILYASQESHYSVFKAARMYIMECVKINTLWSGEIDCDGFEAKLLCHKDKPGIVDVNIV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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