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Integrating Genetics and Genomics to Advance Soybean Research




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Report for Sequence Feature Glyma11g25630

Feature Type:gene_model
Chromosome:Gm11
Start:24331984
stop:24335216
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G75660AT Annotation by Michelle Graham. TAIR10: 5'-3' exoribonuclease 3 | chr1:28408289-28414825 FORWARD LENGTH=1020 SoyBaseE_val: 1.00E-18ISS
GO:0006139GO-bp Annotation by Michelle Graham. GO Biological Process: nucleobase-containing compound metabolic process SoyBaseN/AISS
GO:0006310GO-bp Annotation by Michelle Graham. GO Biological Process: DNA recombination SoyBaseN/AISS
GO:0006635GO-bp Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation SoyBaseN/AISS
GO:0007062GO-bp Annotation by Michelle Graham. GO Biological Process: sister chromatid cohesion SoyBaseN/AISS
GO:0007131GO-bp Annotation by Michelle Graham. GO Biological Process: reciprocal meiotic recombination SoyBaseN/AISS
GO:0009887GO-bp Annotation by Michelle Graham. GO Biological Process: organ morphogenesis SoyBaseN/AISS
GO:0009888GO-bp Annotation by Michelle Graham. GO Biological Process: tissue development SoyBaseN/AISS
GO:0010332GO-bp Annotation by Michelle Graham. GO Biological Process: response to gamma radiation SoyBaseN/AISS
GO:0010587GO-bp Annotation by Michelle Graham. GO Biological Process: miRNA catabolic process SoyBaseN/AISS
GO:0010638GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of organelle organization SoyBaseN/AISS
GO:0016558GO-bp Annotation by Michelle Graham. GO Biological Process: protein import into peroxisome matrix SoyBaseN/AISS
GO:0031048GO-bp Annotation by Michelle Graham. GO Biological Process: chromatin silencing by small RNA SoyBaseN/AISS
GO:0032204GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of telomere maintenance SoyBaseN/AISS
GO:0033044GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of chromosome organization SoyBaseN/AISS
GO:0042138GO-bp Annotation by Michelle Graham. GO Biological Process: meiotic DNA double-strand break formation SoyBaseN/AISS
GO:0043247GO-bp Annotation by Michelle Graham. GO Biological Process: telomere maintenance in response to DNA damage SoyBaseN/AISS
GO:0045132GO-bp Annotation by Michelle Graham. GO Biological Process: meiotic chromosome segregation SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003676GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding SoyBaseN/AISS
GO:0004527GO-mf Annotation by Michelle Graham. GO Molecular Function: exonuclease activity SoyBaseN/AISS
GO:0004534GO-mf Annotation by Michelle Graham. GO Molecular Function: 5'-3' exoribonuclease activity SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
PTHR12341Panther 5'->3' EXORIBONUCLEASE JGI ISS
PTHR12341:SF7Panther 5-3 EXORIBONUCLEASE 1 JGI ISS
UniRef100_B9R871UniRef Annotation by Michelle Graham. Most informative UniRef hit: 5'->3' exoribonuclease, putative n=1 Tax=Ricinus communis RepID=B9R871_RICCO SoyBaseE_val: 4.00E-17ISS
UniRef100_UPI000233EA91UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233EA91 related cluster n=1 Tax=unknown RepID=UPI000233EA91 SoyBaseE_val: 8.00E-19ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g25630 not represented in the dataset

Glyma11g25630 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma11g25630.1   sequence type=CDS   gene model=Glyma11g25630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGTTTTTTTGTCGGCAATGATTTTCTACCACATATGCCTACACTAGAGATTCGTGAGGTCTGGTATTCTAGATCTCTTGTTCTCTCACTCCCTTTCTTTTATATTTTCTATATATTTGGTGTGAATCAAATTTCAGGACTGGAACAACTATCCCAAAAGCTGAAGCTTTTGGATGGAGGCAAAACTCCTGAGGAAATTGAAGCTATACGTAAAGATGTCGTCTTGAAATACACTGAAGGCCTATGTTGGGTGATGCACTATTATTATGAAGGCGCTTGTTCTTGGAATTGGGGAGTTCCTTTTCTAGCTTTTTCTGGAGAATTAAGAAAGCAATGGGAATGCATATATAAATACTATGCTCCAACCCCCAGTTTAATTTGGTGTATAATTTATAGTAATATGTTGCAGCAACTATATAGTTCTGTCTTTCCAGCATTTCCTCATTCATCTATTTCTCTTGCAACTTTTGCAAGTCTCAACAGATGTGGAAAAAGTTGTAGGCTAAGGTGTAATGGGATTAATTATTGTACAAAACTCACATTTCTTAGTTTTGTGTGCAGAAATTCAAACAATGACTGT

>Glyma11g25630.1   sequence type=predicted peptide   gene model=Glyma11g25630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MCFFVGNDFLPHMPTLEIREVWYSRSLVLSLPFFYIFYIFGVNQISGLEQLSQKLKLLDGGKTPEEIEAIRKDVVLKYTEGLCWVMHYYYEGACSWNWGVPFLAFSGELRKQWECIYKYYAPTPSLIWCIIYSNMLQQLYSSVFPAFPHSSISLATFASLNRCGKSCRLRCNGINYCTKLTFLSFVCRNSNNDC







Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
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