|
A newer version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT1G75660 | AT | Annotation by Michelle Graham. TAIR10: 5'-3' exoribonuclease 3 | chr1:28408289-28414825 FORWARD LENGTH=1020 | SoyBase | E_val: 1.00E-18 | ISS |
GO:0006139 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nucleobase-containing compound metabolic process | SoyBase | N/A | ISS |
GO:0006310 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA recombination | SoyBase | N/A | ISS |
GO:0006635 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation | SoyBase | N/A | ISS |
GO:0007062 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sister chromatid cohesion | SoyBase | N/A | ISS |
GO:0007131 | GO-bp | Annotation by Michelle Graham. GO Biological Process: reciprocal meiotic recombination | SoyBase | N/A | ISS |
GO:0009887 | GO-bp | Annotation by Michelle Graham. GO Biological Process: organ morphogenesis | SoyBase | N/A | ISS |
GO:0009888 | GO-bp | Annotation by Michelle Graham. GO Biological Process: tissue development | SoyBase | N/A | ISS |
GO:0010332 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to gamma radiation | SoyBase | N/A | ISS |
GO:0010587 | GO-bp | Annotation by Michelle Graham. GO Biological Process: miRNA catabolic process | SoyBase | N/A | ISS |
GO:0010638 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of organelle organization | SoyBase | N/A | ISS |
GO:0016558 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein import into peroxisome matrix | SoyBase | N/A | ISS |
GO:0031048 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromatin silencing by small RNA | SoyBase | N/A | ISS |
GO:0032204 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of telomere maintenance | SoyBase | N/A | ISS |
GO:0033044 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of chromosome organization | SoyBase | N/A | ISS |
GO:0042138 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meiotic DNA double-strand break formation | SoyBase | N/A | ISS |
GO:0043247 | GO-bp | Annotation by Michelle Graham. GO Biological Process: telomere maintenance in response to DNA damage | SoyBase | N/A | ISS |
GO:0045132 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meiotic chromosome segregation | SoyBase | N/A | ISS |
GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
GO:0004527 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: exonuclease activity | SoyBase | N/A | ISS |
GO:0004534 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 5'-3' exoribonuclease activity | SoyBase | N/A | ISS |
GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
PTHR12341 | Panther | 5'->3' EXORIBONUCLEASE | JGI | ISS | |
PTHR12341:SF7 | Panther | 5-3 EXORIBONUCLEASE 1 | JGI | ISS | |
UniRef100_B9R871 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 5'->3' exoribonuclease, putative n=1 Tax=Ricinus communis RepID=B9R871_RICCO | SoyBase | E_val: 4.00E-17 | ISS |
UniRef100_UPI000233EA91 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233EA91 related cluster n=1 Tax=unknown RepID=UPI000233EA91 | SoyBase | E_val: 8.00E-19 | ISS |
Glyma11g25630 not represented in the dataset |
Glyma11g25630 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Corresponding Name | Annotation Version | Evidence | Comments |
---|
Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g25630.1 sequence type=CDS gene model=Glyma11g25630 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTGTTTTTTTGTCGGCAATGATTTTCTACCACATATGCCTACACTAGAGATTCGTGAGGTCTGGTATTCTAGATCTCTTGTTCTCTCACTCCCTTTCTTTTATATTTTCTATATATTTGGTGTGAATCAAATTTCAGGACTGGAACAACTATCCCAAAAGCTGAAGCTTTTGGATGGAGGCAAAACTCCTGAGGAAATTGAAGCTATACGTAAAGATGTCGTCTTGAAATACACTGAAGGCCTATGTTGGGTGATGCACTATTATTATGAAGGCGCTTGTTCTTGGAATTGGGGAGTTCCTTTTCTAGCTTTTTCTGGAGAATTAAGAAAGCAATGGGAATGCATATATAAATACTATGCTCCAACCCCCAGTTTAATTTGGTGTATAATTTATAGTAATATGTTGCAGCAACTATATAGTTCTGTCTTTCCAGCATTTCCTCATTCATCTATTTCTCTTGCAACTTTTGCAAGTCTCAACAGATGTGGAAAAAGTTGTAGGCTAAGGTGTAATGGGATTAATTATTGTACAAAACTCACATTTCTTAGTTTTGTGTGCAGAAATTCAAACAATGACTGT
>Glyma11g25630.1 sequence type=predicted peptide gene model=Glyma11g25630 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MCFFVGNDFLPHMPTLEIREVWYSRSLVLSLPFFYIFYIFGVNQISGLEQLSQKLKLLDGGKTPEEIEAIRKDVVLKYTEGLCWVMHYYYEGACSWNWGVPFLAFSGELRKQWECIYKYYAPTPSLIWCIIYSNMLQQLYSSVFPAFPHSSISLATFASLNRCGKSCRLRCNGINYCTKLTFLSFVCRNSNNDC
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||