Glyma11g25601 - SoyBase

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Report for Sequence Feature Glyma11g25601

Feature Type:	gene_model
Chromosome:	Gm11
Start:	24255870
stop:	24260224
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g25601

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G15090	AT	Annotation by Michelle Graham. TAIR10: FRS (FAR1 Related Sequences) transcription factor family \| chr4:8614806-8617870 FORWARD LENGTH=827	SoyBase	E_val: 3.00E-15	ISS
GO:0000085	GO-bp	Annotation by Michelle Graham. GO Biological Process: G2 phase of mitotic cell cycle	SoyBase	N/A	ISS
GO:0000724	GO-bp	Annotation by Michelle Graham. GO Biological Process: double-strand break repair via homologous recombination	SoyBase	N/A	ISS
GO:0006396	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA processing	SoyBase	N/A	ISS
GO:0009410	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to xenobiotic stimulus	SoyBase	N/A	ISS
GO:0009630	GO-bp	Annotation by Michelle Graham. GO Biological Process: gravitropism	SoyBase	N/A	ISS
GO:0009639	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to red or far red light	SoyBase	N/A	ISS
GO:0009640	GO-bp	Annotation by Michelle Graham. GO Biological Process: photomorphogenesis	SoyBase	N/A	ISS
GO:0010017	GO-bp	Annotation by Michelle Graham. GO Biological Process: red or far-red light signaling pathway	SoyBase	N/A	ISS
GO:0010018	GO-bp	Annotation by Michelle Graham. GO Biological Process: far-red light signaling pathway	SoyBase	N/A	ISS
GO:0010212	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to ionizing radiation	SoyBase	N/A	ISS
GO:0010218	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to far red light	SoyBase	N/A	ISS
GO:0016567	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein ubiquitination	SoyBase	N/A	ISS
GO:0016571	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone methylation	SoyBase	N/A	ISS
GO:0016579	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein deubiquitination	SoyBase	N/A	ISS
GO:0022402	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell cycle process	SoyBase	N/A	ISS
GO:0042753	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of circadian rhythm	SoyBase	N/A	ISS
GO:0045893	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0048522	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of cellular process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PF10551	PFAM	MULE transposase domain	JGI		ISS
UniRef100_I1N2F9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N2F9_SOYBN	SoyBase	E_val: 5.00E-53	ISS
UniRef100_Q7XVP7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: OSJNBa0050F15.2 protein n=2 Tax=Oryza sativa Japonica Group RepID=Q7XVP7_ORYSJ	SoyBase	E_val: 8.00E-22	ISS

Expression Patterns of Glyma11g25601

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g25601 not represented in the dataset	Glyma11g25601 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma11g25601 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g156800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g25601

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma11g25601

Limit To All Plant Sequences

>Glyma11g25601.1   sequence type=CDS   gene model=Glyma11g25601   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATGAAGAGGATGAGTCTTCATTTAGGTGTCATTCAAGTGAAACAGCTGCTTCGGGTTTGGAGGGCATAATAGTAGGAGAAGGGTTATGCGGCGATTTGGGAGCTTCCTTTTATGTGTTGGGTGATGCGTATGGTAATGTATTTATGGATGAAGATGGAGAGGATAAAGTTGAAGATGATGACAATGACAATAAGGAAGATGAGGAGTCGATTGAGTATAAGGTGGAAGAGGATTATGATTTTGATAGTATTAGATGTGGAAGAAGTGGTGGTTTTTATGCAGAAGATGCTATAACTGAATATAAAGTTGGTAGAGGTCTGATTTTGGGCAAGAGGAAACGTCATTCAAAGAATGTCACTAGTCATTTATGTAAAAAGGATCCAATGATGTTTGTATCATACACAATTGATGAATGCCAGAGATTGCAACATTTGTTTTGGTTTGATATTGAAAGTCAGTTGAATTATGAGGTGTTTGGTGATGTACTTTCCTTTGATGCGATGTATAAGAAGAACAAGTATTTATGTCTATTTTGTTGTTTTCTTTGGTGTCAACCACCACAATCAGACGATACTGTTGGACAATTTGTGGATGCCATGAAAGGAAAATCTTTGTCATCTATAATAATTGGTGGTGATCTTGCAATGAGAAATGTCATAAGGAGGGTGTTTCCTAAAGCCCAACACATGTTATGTGGATGGCATTTGATGCGAAACACAGGTAGCCATGAGCATGATAAAGCAGTTTTAAAATATCTGAAGGGTTTGATGATTGGTGATTTTGAAGTTGGTGACTTTGAACATAAATGGTGGGACATGGCTGCAAAATATGGATTGGAAAATAACAATTGGATAAGTGATTTGGTACTTTGTGAGTTTTCTTACTGTGAAGAAGAAGACTATGAAAACATGTTTGACTTGTTCTCAGAACAACTTACTAGGATGAGATTGAAAAATAGGAGCATACCTCCTGAAAGTGCCCCTAATGCTGAAACAAAAATAACTTTTGACAGTGTTTTAGATCCTATGTTGTGGTGTATGTGCGTTTTTGAGGAGTATATGGTGAATTTTGGTCGATTTCCATCGTCGAAAAAGAAGAGGAGTGCAAAAAAGAATTTGACGTACGTACGGATTGACAATCCGTATGGCTATACAGATTGCCAATCCGTACGGCCAAATCATTTTTAA

Predicted protein sequences of Glyma11g25601

Limit To All Plant Sequences

>Glyma11g25601.1   sequence type=predicted peptide   gene model=Glyma11g25601   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNEEDESSFRCHSSETAASGLEGIIVGEGLCGDLGASFYVLGDAYGNVFMDEDGEDKVEDDDNDNKEDEESIEYKVEEDYDFDSIRCGRSGGFYAEDAITEYKVGRGLILGKRKRHSKNVTSHLCKKDPMMFVSYTIDECQRLQHLFWFDIESQLNYEVFGDVLSFDAMYKKNKYLCLFCCFLWCQPPQSDDTVGQFVDAMKGKSLSSIIIGGDLAMRNVIRRVFPKAQHMLCGWHLMRNTGSHEHDKAVLKYLKGLMIGDFEVGDFEHKWWDMAAKYGLENNNWISDLVLCEFSYCEEEDYENMFDLFSEQLTRMRLKNRSIPPESAPNAETKITFDSVLDPMLWCMCVFEEYMVNFGRFPSSKKKRSAKKNLTYVRIDNPYGYTDCQSVRPNHF*

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