SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G14250 | AT | Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein | chr3:4745963-4746958 REVERSE LENGTH=303 | SoyBase | E_val: 5.00E-60 | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| PTHR11685 | Panther | ARIADNE RING ZINC FINGER | JGI | ISS | |
| PTHR11685:SF66 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF01485 | PFAM | IBR domain | JGI | ISS | |
| PF05340 | PFAM | Protein of unknown function (DUF740) | JGI | ISS | |
| UniRef100_G7KAA3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: E3 ubiquitin-protein ligase RNF19A n=1 Tax=Medicago truncatula RepID=G7KAA3_MEDTR | SoyBase | E_val: 1.00E-61 | ISS |
| UniRef100_UPI000233D2DE | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233D2DE related cluster n=1 Tax=unknown RepID=UPI000233D2DE | SoyBase | E_val: 0 | ISS |
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Glyma11g23790 not represented in the dataset |
Glyma11g23790 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g177200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g23790.1 sequence type=CDS gene model=Glyma11g23790 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCATTTAGTTTCACTCTCACTCATGACTTCTAAAACTCAGCATTGCGTTATCCGTGGCCATCACAAGTCCACACATTTCAATGGTATCTGTGCCTCCTGTCTTCGGGAACGCCTCGCCGCCATCGCTTCCTCCTCCTCTGCCACGCCGGAGCTCGACCTCACCATCAAGTCGTCTTTCCCCTTTGACCCCTTGGGGCTCGAAACGCCACGGTGCTCGCCGCGAAGACAGAAGAAAAAGTCCCTCCTTGATCATGATGACAGTGGTGAAGATCAACCCTCATTTTTCCTTTGTGACATATGTTTTGATGACAAACCAGTGTCTGACATGTTCGAAGAGGGTAAGTGTAACCACCTCTTTTGCACTCACTGCATGTCAAAATACGTGACTACTCAAATACAACAAAACATTCTCAAGGTGATCATGTGTCCAAACGCTAATTGCTCCGTGGAATTGAAGCCCGAATATTTTCACAACATTTTGGCCAGTGAAGTCATTGTTAGATGGGAAACTGTGATGTGCGAATCCATGATTGTTGAGTTGGAGAAGACTTACTGCCCCTTCAAGGACTGTTCAGTTCTGTTGGTGAACGATGGAGAAAAGGTTGTGACCAGTGCTGAGTGCCCCTCTTGTCATAGGCTATTTTGCGCACAGTGTAAGGTTCCTTGGCATGGAAGTATGAGTTGTGAAGAATTCCAAGAGATAGAAAGGAACAAAGATGAAAAAGTGTTGGAAAACAAGTTCTTCAAGCTGGCTAAAGAGGAAAAATGGCAGAAATGTCCCCGGTGCACTATGTTTGTCCAGAGACGTGAGGGATGTGATCACATGACTTGCAGGTGTGGATGTGACTTCTGCTACATTTGTGGGAAGAATTGGATGCTTGTACATAATTGCAAGAAGAATCCGTCCACTTGA
>Glyma11g23790.1 sequence type=predicted peptide gene model=Glyma11g23790 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MHLVSLSLMTSKTQHCVIRGHHKSTHFNGICASCLRERLAAIASSSSATPELDLTIKSSFPFDPLGLETPRCSPRRQKKKSLLDHDDSGEDQPSFFLCDICFDDKPVSDMFEEGKCNHLFCTHCMSKYVTTQIQQNILKVIMCPNANCSVELKPEYFHNILASEVIVRWETVMCESMIVELEKTYCPFKDCSVLLVNDGEKVVTSAECPSCHRLFCAQCKVPWHGSMSCEEFQEIERNKDEKVLENKFFKLAKEEKWQKCPRCTMFVQRREGCDHMTCRCGCDFCYICGKNWMLVHNCKKNPST*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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