SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G14250 | AT | Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein | chr3:4745963-4746958 REVERSE LENGTH=303 | SoyBase | E_val: 3.00E-40 | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| PTHR11685 | Panther | ARIADNE RING ZINC FINGER | JGI | ISS | |
| PTHR11685:SF66 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF01485 | PFAM | IBR domain | JGI | ISS | |
| UniRef100_B9RR33 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9RR33_RICCO | SoyBase | E_val: 6.00E-41 | ISS |
| UniRef100_I1LLF1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1LLF1_SOYBN | SoyBase | E_val: 3.00E-112 | ISS |
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Glyma11g23590 not represented in the dataset |
Glyma11g23590 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g177000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g23590.2 sequence type=CDS gene model=Glyma11g23590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAAACAGAAGCAAAGCAACAAAAATTGTTGAAGGGTAAATCCCCCCTTGATCATGATCCCGGTGAAGCAAAGAAGAGTGATCAACCCTCACAATTCCTTTGTGGTTTATGTTTTAATGACAAACCAGTGTCTCAAATGTTCAAAGAAGGTAAGTGTAACCACCCCTTTTGTACTCACTGCATATCCAAACACGTGGCTACTCAGATGCACCAAAACATTCTCAAGGTGATGTGTCCAAACCCTAACTGTCCCGTGGAATTGAAGCCCGAATATTTTCACAACATTTTGGCCAGTGAAGTCATTGTTAGATGGGAAACCGTGAGGTGTGAGTCTTTGATTGTTGGGTTGGAGAAGACCTACTGTCCCTTCAAGGACTGTTCTGTTTTGTTGGTGAATGATGGAGAAAAAGATGTGATCAGTGCTGAGTGCCCCTCTTGTCATAGGCTATTTTGCGCACGGTGTAAGGTTCCTTGGCATGGAATTATGAGTTGTGAAGAATTCCAAGAGATAGAAAGGAGCAAAGATGAAATAGTGTTGAAAAACTAA
>Glyma11g23590.2 sequence type=predicted peptide gene model=Glyma11g23590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQTEAKQQKLLKGKSPLDHDPGEAKKSDQPSQFLCGLCFNDKPVSQMFKEGKCNHPFCTHCISKHVATQMHQNILKVMCPNPNCPVELKPEYFHNILASEVIVRWETVRCESLIVGLEKTYCPFKDCSVLLVNDGEKDVISAECPSCHRLFCARCKVPWHGIMSCEEFQEIERSKDEIVLKN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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